Cardiometabolic health, diet and the gut microbiome: a meta-omics perspective

M Valles-Colomer, C Menni, SE Berry, AM Valdes… - Nature Medicine, 2023 - nature.com
Cardiometabolic diseases have become a leading cause of morbidity and mortality globally.
They have been tightly linked to microbiome taxonomic and functional composition, with diet …

A review of methods and databases for metagenomic classification and assembly

FP Breitwieser, J Lu, SL Salzberg - Briefings in bioinformatics, 2019 - academic.oup.com
Microbiome research has grown rapidly over the past decade, with a proliferation of new
methods that seek to make sense of large, complex data sets. Here, we survey two of the …

A new perspective on microbes formerly known as nitrite-oxidizing bacteria

H Daims, S Lücker, M Wagner - Trends in microbiology, 2016 - cell.com
Nitrite-oxidizing bacteria (NOB) catalyze the second step of nitrification, nitrite oxidation to
nitrate, which is an important process of the biogeochemical nitrogen cycle. NOB were …

Exposure to the Functional Bacterial Amyloid Protein Curli Enhances Alpha-Synuclein Aggregation in Aged Fischer 344 Rats and Caenorhabditis elegans

SG Chen, V Stribinskis, MJ Rane, DR Demuth… - Scientific reports, 2016 - nature.com
Misfolded alpha-synuclein (AS) and other neurodegenerative disorder proteins display prion-
like transmission of protein aggregation. Factors responsible for the initiation of AS …

Foodomics: A new approach in food quality and safety

P Balkir, K Kemahlioglu, U Yucel - Trends in Food Science & Technology, 2021 - Elsevier
Background. The progress in the analytical methods in food science and technology brought
about a novel and modern approach concerning human health and food quality and safety …

Molecular insights into plant–microbe interactions for sustainable remediation of contaminated environment

NR Rane, S Tapase, A Kanojia, A Watharkar… - Bioresource …, 2022 - Elsevier
The widespread distribution of organic and inorganic pollutants in water resources have
increased due to rapid industrialization. Rhizospheric zone-associated bacteria along with …

[HTML][HTML] Challenges and perspectives of metaproteomic data analysis

R Heyer, K Schallert, R Zoun, B Becher, G Saake… - Journal of …, 2017 - Elsevier
In nature microorganisms live in complex microbial communities. Comprehensive taxonomic
and functional knowledge about microbial communities supports medical and technical …

Cross-species RNA-seq for deciphering host–microbe interactions

AJ Westermann, J Vogel - Nature Reviews Genetics, 2021 - nature.com
The human body is constantly exposed to microorganisms, which entails manifold
interactions between human cells and diverse commensal or pathogenic bacteria. The …

The multi-omics promise in context: from sequence to microbial isolate

J Gutleben, M Chaib De Mares… - Critical reviews in …, 2018 - Taylor & Francis
The numbers and diversity of microbes in ecosystems within and around us is unmatched,
yet most of these microorganisms remain recalcitrant to in vitro cultivation. Various high …

Single cell stable isotope probing in microbiology using Raman microspectroscopy

Y Wang, WE Huang, L Cui, M Wagner - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Single cell Raman spectra (SCRS) are label-free and intrinsic biochemical
profiles of single microbial cells.•A number of bands of SCRS shift if cells are labeled with …