High-resolution native mass spectrometry

S Tamara, MA den Boer, AJR Heck - Chemical reviews, 2021 - ACS Publications
Native mass spectrometry (MS) involves the analysis and characterization of
macromolecules, predominantly intact proteins and protein complexes, whereby as much as …

Cross-linking mass spectrometry for investigating protein conformations and protein–protein Interactions─ A method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

CombFold: predicting structures of large protein assemblies using a combinatorial assembly algorithm and AlphaFold2

B Shor, D Schneidman-Duhovny - Nature methods, 2024 - nature.com
Deep learning models, such as AlphaFold2 and RosettaFold, enable high-accuracy protein
structure prediction. However, large protein complexes are still challenging to predict due to …

The emerging landscape of single-molecule protein sequencing technologies

JA Alfaro, P Bohländer, M Dai, M Filius, CJ Howard… - Nature …, 2021 - nature.com
Single-cell profiling methods have had a profound impact on the understanding of cellular
heterogeneity. While genomes and transcriptomes can be explored at the single-cell level …

Mass spectrometry of nucleic acid noncovalent complexes

E Largy, A Konig, A Ghosh, D Ghosh… - Chemical …, 2021 - ACS Publications
Nucleic acids have been among the first targets for antitumor drugs and antibiotics. With the
unveiling of new biological roles in regulation of gene expression, specific DNA and RNA …

Integration of mass spectrometry data for structural biology

HM Britt, T Cragnolini, K Thalassinos - Chemical reviews, 2021 - ACS Publications
Mass spectrometry (MS) is increasingly being used to probe the structure and dynamics of
proteins and the complexes they form with other macromolecules. There are now several …

PyXlinkViewer: A flexible tool for visualization of protein chemical crosslinking data within the PyMOL molecular graphics system

B Schiffrin, SE Radford, DJ Brockwell… - Protein …, 2020 - Wiley Online Library
Chemical crosslinking‐mass spectrometry (XL‐MS) is a valuable technique for gaining
insights into protein structure and the organization of macromolecular complexes. XL‐MS …

HspB8 prevents aberrant phase transitions of FUS by chaperoning its folded RNA-binding domain

EE Boczek, J Fürsch, ML Niedermeier, L Jawerth… - Elife, 2021 - elifesciences.org
Aberrant liquid-to-solid phase transitions of biomolecular condensates have been linked to
various neurodegenerative diseases. However, the underlying molecular interactions that …

A multi-scale map of protein assemblies in the DNA damage response

A Kratz, M Kim, MR Kelly, F Zheng, CA Koczor, J Li… - Cell systems, 2023 - cell.com
The DNA damage response (DDR) ensures error-free DNA replication and transcription and
is disrupted in numerous diseases. An ongoing challenge is to determine the proteins …

Characterizing endogenous protein complexes with biological mass spectrometry

R Rogawski, M Sharon - Chemical reviews, 2021 - ACS Publications
Biological mass spectrometry (MS) encompasses a range of methods for characterizing
proteins and other biomolecules. MS is uniquely powerful for the structural analysis of …