Proteolytic Cleavage Mechanisms, Function, and “Omic” Approaches for a Near-Ubiquitous Posttranslational Modification

T Klein, U Eckhard, A Dufour, N Solis… - Chemical …, 2018 - ACS Publications
Proteases enzymatically hydrolyze peptide bonds in substrate proteins, resulting in a
widespread, irreversible posttranslational modification of the protein's structure and …

A critical analysis of research methods and experimental models to study pulpitis

R Richert, M Ducret, B Alliot‐Licht… - International …, 2022 - Wiley Online Library
Pulpitis is the inflammatory response of the dental pulp to a tooth insult, whether it is
microbial, chemical, or physical in origin. It is traditionally referred to as reversible or …

Sensitive determination of proteolytic proteoforms in limited microscale proteome samples

SSH Weng, F Demir, EK Ergin, S Dirnberger… - Molecular & Cellular …, 2019 - mcponline.org
Protein N termini unambiguously identify truncated, alternatively translated or modified
proteoforms with distinct functions and reveal perturbations in disease. Selective enrichment …

Detecting post-translational modification signatures as potential biomarkers in clinical mass spectrometry

R Mnatsakanyan, G Shema, M Basik… - Expert Review of …, 2018 - Taylor & Francis
Introduction: Numerous diseases are caused by changes in post-translational modifications
(PTMs). Therefore, the number of clinical proteomics studies that include the analysis of …

Metrics for the Human Proteome Project 2016: progress on identifying and characterizing the human proteome, including post-translational modifications

GS Omenn, L Lane, EK Lundberg… - Journal of proteome …, 2016 - ACS Publications
The HUPO Human Proteome Project (HPP) has two overall goals:(1) stepwise completion of
the protein parts list the draft human proteome including confidently identifying and …

[HTML][HTML] Top-down proteomics for the analysis of proteolytic events-Methods, applications and perspectives

A Tholey, A Becker - Biochimica et Biophysica Acta (BBA)-Molecular Cell …, 2017 - Elsevier
Mass spectrometry based proteomics is an indispensable tool for almost all research areas
relevant for the understanding of proteolytic processing, ranging from the identification of …

Progress on identifying and characterizing the human proteome: 2018 metrics from the HUPO human proteome project

GS Omenn, L Lane, CM Overall… - Journal of proteome …, 2018 - ACS Publications
The Human Proteome Project (HPP) annually reports on progress throughout the field in
credibly identifying and characterizing the human protein parts list and making proteomics …

TAILS N-terminomics and proteomics show protein degradation dominates over proteolytic processing by cathepsins in pancreatic tumors

A Prudova, V Gocheva, U Auf dem Keller, U Eckhard… - Cell reports, 2016 - cell.com
Deregulated cathepsin proteolysis occurs across numerous cancers, but in vivo substrates
mediating tumorigenesis remain ill-defined. Applying 8-plex iTRAQ terminal amine isotopic …

Advances of proteomic sciences in dentistry

Z Khurshid, S Zohaib, S Najeeb, MS Zafar… - International journal of …, 2016 - mdpi.com
Applications of proteomics tools revolutionized various biomedical disciplines such as
genetics, molecular biology, medicine, and dentistry. The aim of this review is to highlight the …

Comprehensive analysis of human protein N-termini enables assessment of various protein forms

J Yeom, S Ju, YJ Choi, E Paek, C Lee - Scientific Reports, 2017 - nature.com
Various forms of protein (proteoforms) are generated by genetic variations, alternative
splicing, alternative translation initiation, co-or post-translational modification and …