Linking plant secondary metabolites and plant microbiomes: a review

Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …

Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Inter-bacterial mutualism promoted by public goods in a system characterized by deterministic temperature variation

Y Zhao, Z Liu, B Zhang, J Cai, X Yao, M Zhang… - Nature …, 2023 - nature.com
Mutualism is commonly observed in nature but not often reported for bacterial communities.
Although abiotic stress is thought to promote microbial mutualism, there is a paucity of …

Climate warming enhances microbial network complexity and stability

MM Yuan, X Guo, L Wu, YA Zhang, N **ao… - Nature Climate …, 2021 - nature.com
Unravelling the relationships between network complexity and stability under changing
climate is a challenging topic in theoretical ecology that remains understudied in the field of …

iNAP: an integrated network analysis pipeline for microbiome studies

K Feng, X Peng, Z Zhang, S Gu, Q He, W Shen, Z Wang… - Imeta, 2022 - Wiley Online Library
Integrated network analysis pipeline (iNAP) is an online analysis pipeline for generating and
analyzing comprehensive ecological networks in microbiome studies. It is implemented in …

Network complexity and stability of microbes enhanced by microplastic diversity

H Wu, T Gao, A Hu, J Wang - Environmental science & technology, 2024 - ACS Publications
Microplastic mixtures are ubiquitously distributed in global ecosystems and include varying
types. However, it remains unknown how microplastic diversity affects the biotic interactions …

Reduced microbial stability in the active layer is associated with carbon loss under alpine permafrost degradation

MH Wu, SY Chen, JW Chen, K Xue, SL Chen… - Proceedings of the …, 2021 - pnas.org
Permafrost degradation may induce soil carbon (C) loss, critical for global C cycling, and be
mediated by microbes. Despite larger C stored within the active layer of permafrost regions …

The diet rapidly and differentially affects the gut microbiota and host lipid mediators in a healthy population

I Bourdeau-Julien, S Castonguay-Paradis, G Rochefort… - Microbiome, 2023 - Springer
Background Bioactive lipids produced by human cells or by the gut microbiota might play an
important role in health and disease. Dietary intakes are key determinants of the gut …

Association of biochar properties with changes in soil bacterial, fungal and fauna communities and nutrient cycling processes

Z Dai, X **ong, H Zhu, H Xu, P Leng, J Li, C Tang, J Xu - Biochar, 2021 - Springer
Soil microorganisms play crucial roles in soil nutrient cycling, carbon sequestration, fertility
maintenance and crop health and production. To date, the responses of microorganisms …

Open challenges for microbial network construction and analysis

K Faust - The ISME Journal, 2021 - academic.oup.com
Microbial network construction is a popular explorative data analysis technique in
microbiome research. Although a large number of microbial network construction tools has …