Rice functional genomics: decades' efforts and roads ahead

R Chen, Y Deng, Y Ding, J Guo, J Qiu, B Wang… - Science China Life …, 2022 - Springer
Rice (Oryza sativa L.) is one of the most important crops in the world. Since the completion of
rice reference genome sequences, tremendous progress has been achieved in …

From Green Super Rice to green agriculture: Rea** the promise of functional genomics research

S Yu, J Ali, S Zhou, G Ren, H **e, J Xu, X Yu, F Zhou… - Molecular Plant, 2022 - cell.com
Producing sufficient food with finite resources to feed the growing global population while
having a smaller impact on the environment has always been a great challenge. Here, we …

Stress-induced nuclear translocation of ONAC023 improves drought and heat tolerance through multiple processes in rice

Y Chang, Y Fang, J Liu, T Ye, X Li, H Tu, Y Ye… - Nature …, 2024 - nature.com
Drought and heat are major abiotic stresses frequently coinciding to threaten rice
production. Despite hundreds of stress-related genes being identified, only a few have been …

Base-editing-mediated artificial evolution of OsALS1 in planta to develop novel herbicide-tolerant rice germplasms

Y Kuang, S Li, B Ren, F Yan, C Spetz, X Li, X Zhou… - Molecular plant, 2020 - cell.com
Recently developed CRISPR-mediated base editors, which enable the generation of
numerous nucleotide changes in target genomic regions, have been widely adopted for …

Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields

X Fan, Z Tang, Y Tan, Y Zhang, B Luo… - Proceedings of the …, 2016 - National Acad Sciences
Cellular pH homeostasis is fundamental for life, and all cells adapt to maintain this balance.
In plants, the chemical form of nitrogen supply, nitrate and ammonium, is one of the cellular …

Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance

M Peng, R Shahzad, A Gul, H Subthain, S Shen… - Nature …, 2017 - nature.com
Decoration of phytochemicals contributes to the majority of metabolic diversity in nature,
whereas how this process alters the biological functions of their precursor molecules …

Rice SNP-seek database update: new SNPs, indels, and queries

L Mansueto, RR Fuentes, FN Borja… - Nucleic acids …, 2017 - academic.oup.com
We describe updates to the Rice SNP-Seek Database since its first release. We ran a new
SNP-calling pipeline followed by filtering that resulted in complete, base, filtered and core …

Natural variations of SLG1 confer high-temperature tolerance in indica rice

Y Xu, L Zhang, S Ou, R Wang, Y Wang, C Chu… - Nature …, 2020 - nature.com
With global warming and climate change, breeding crop plants tolerant to high-temperature
stress is of immense significance. tRNA 2-thiolation is a highly conserved form of tRNA …

Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains

Y Shi, Y Zhang, Y Sun, Z **e, Y Luo, Q Long, J Feng… - Molecular Plant, 2023 - cell.com
Grain essential amino acid (EAA) levels contribute to rice nutritional quality. However, the
molecular mechanisms underlying EAA accumulation and natural variation in rice grains …

Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals

W Chen, W Wang, M Peng, L Gong, Y Gao… - Nature …, 2016 - nature.com
The plant metabolome is characterized by extensive diversity and is often regarded as a
bridge between genome and phenome. Here we report metabolic and phenotypic genome …