Designing cell function: assembly of synthetic gene circuits for cell biology applications

M **e, M Fussenegger - Nature Reviews Molecular Cell Biology, 2018 - nature.com
Synthetic biology is the discipline of engineering application-driven biological functionalities
that were not evolved by nature. Early breakthroughs of cell engineering, which were based …

Synthetic biology: applications come of age

AS Khalil, JJ Collins - Nature Reviews Genetics, 2010 - nature.com
Synthetic biology is bringing together engineers and biologists to design and build novel
biomolecular components, networks and pathways, and to use these constructs to rewire …

Genetic circuit design automation

AAK Nielsen, BS Der, J Shin, P Vaidyanathan… - Science, 2016 - science.org
INTRODUCTION Cells respond to their environment, make decisions, build structures, and
coordinate tasks. Underlying these processes are computational operations performed by …

Nature, nurture, or chance: stochastic gene expression and its consequences

A Raj, A Van Oudenaarden - Cell, 2008 - cell.com
Gene expression is a fundamentally stochastic process, with randomness in transcription
and translation leading to cell-to-cell variations in mRNA and protein levels. This variation …

[KİTAP][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Network motifs: theory and experimental approaches

U Alon - Nature Reviews Genetics, 2007 - nature.com
Transcription regulation networks control the expression of genes. The transcription
networks of well-studied microorganisms appear to be made up of a small set of recurring …

Molecular recordings by directed CRISPR spacer acquisition

SL Shipman, J Nivala, JD Macklis, GM Church - Science, 2016 - science.org
INTRODUCTION Although recent advances in DNA synthesis and sequencing technologies
have made practical the writing and readout of arbitrary data in the form of synthetic DNA …

Synthetic biology in mammalian cells: next generation research tools and therapeutics

F Lienert, JJ Lohmueller, A Garg… - Nature reviews Molecular …, 2014 - nature.com
Recent progress in DNA manipulation and gene circuit engineering has greatly improved
our ability to programme and probe mammalian cell behaviour. These advances have led to …

A synthetic genetic edge detection program

JJ Tabor, HM Salis, ZB Simpson, AA Chevalier… - Cell, 2009 - cell.com
Edge detection is a signal processing algorithm common in artificial intelligence and image
recognition programs. We have constructed a genetically encoded edge detection algorithm …

Phenotypic consequences of promoter-mediated transcriptional noise

WJ Blake, G Balázsi, MA Kohanski, FJ Isaacs… - Molecular cell, 2006 - cell.com
A more complete understanding of the causes and effects of cell-cell variability in gene
expression is needed to elucidate whether the resulting phenotypes are disadvantageous or …