The evolution of transcriptional regulation in eukaryotes

GA Wray, MW Hahn, E Abouheif… - Molecular biology …, 2003 - academic.oup.com
Gene expression is central to the genotype-phenotype relationship in all organisms, and it is
an important component of the genetic basis for evolutionary change in diverse aspects of …

Candida albicans: A molecular revolution built on lessons from budding yeast

J Berman, PE Sudbery - Nature Reviews Genetics, 2002 - nature.com
Candida albicans is an opportunistic fungal pathogen that is found in the normal
gastrointestinal flora of most healthy humans. However, in immunocompromised patients …

Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

CP Kubicek, A Herrera-Estrella, V Seidl-Seiboth… - Genome biology, 2011 - Springer
Background Mycoparasitism, a lifestyle where one fungus is parasitic on another fungus,
has special relevance when the prey is a plant pathogen, providing a strategy for biological …

The diploid genome sequence of Candida albicans

T Jones, NA Federspiel, H Chibana… - Proceedings of the …, 2004 - National Acad Sciences
We present the diploid genome sequence of the fungal pathogen Candida albicans.
Because C. albicans has no known haploid or homozygous form, sequencing was …

Yesterday's polyploids and the mystery of diploidization

KH Wolfe - Nature Reviews Genetics, 2001 - nature.com
Abstract Thirty years after Susumu Ohno proposed that vertebrate genomes are degenerate
polyploids, the extent to which genome duplication contributed to the evolution of the …

The evolutionary dynamics of eukaryotic gene order

LD Hurst, C Pál, MJ Lercher - Nature Reviews Genetics, 2004 - nature.com
In eukaryotes, unlike in bacteria, gene order has typically been assumed to be random.
However, the first statistically rigorous analyses of complete genomes, together with the …

Yeast evolutionary genomics

B Dujon - Nature Reviews Genetics, 2010 - nature.com
Over the past few years, genome sequences have become available from an increasing
range of yeast species, which has led to notable advances in our understanding of …

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

L Ma, Z Chen, DW Huang, G Kutty, M Ishihara… - Nature …, 2016 - nature.com
Pneumocystis jirovecii is a major cause of life-threatening pneumonia in immunosuppressed
patients including transplant recipients and those with HIV/AIDS, yet surprisingly little is …

Structural dynamics of eukaryotic chromosome evolution

EE Eichler, D Sankoff - science, 2003 - science.org
Large-scale genome sequencing is providing a comprehensive view of the complex
evolutionary forces that have shaped the structure of eukaryotic chromosomes. Comparative …

Genomics of the fungal kingdom: insights into eukaryotic biology

JE Galagan, MR Henn, LJ Ma, CA Cuomo… - Genome …, 2005 - genome.cshlp.org
The last decade has witnessed a revolution in the genomics of the fungal kingdom. Since
the sequencing of the first fungus in 1996, the number of available fungal genome …