Prunus genetics and applications after de novo genome sequencing: achievements and prospects

MJ Aranzana, V Decroocq, E Dirlewanger… - Horticulture …, 2019 - academic.oup.com
Prior to the availability of whole-genome sequences, our understanding of the structural and
functional aspects of Prunus tree genomes was limited mostly to molecular genetic map** …

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

S Jung, T Lee, CH Cheng, K Buble… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Genome Database for Rosaceae (GDR, https://www. rosaceae. org) is an
integrated web-based community database resource providing access to publicly available …

The Peach v2. 0 release: high-resolution linkage map** and deep resequencing improve chromosome-scale assembly and contiguity

I Verde, J Jenkins, L Dondini, S Micali, G Pagliarani… - BMC genomics, 2017 - Springer
Background The availability of the peach genome sequence has fostered relevant research
in peach and related Prunus species enabling the identification of genes underlying …

The Draft Genome Sequence of European Pear (Pyrus communis L. 'Bartlett')

D Chagné, RN Crowhurst, M Pindo, A Thrimawithana… - PloS one, 2014 - journals.plos.org
We present a draft assembly of the genome of European pear (Pyrus communis)'Bartlett'.
Our assembly was developed employing second generation sequencing technology (Roche …

Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genoty** Array for Apple (Malus × domestica Borkh)

L Bianco, A Cestaro, DJ Sargent, E Banchi, S Derdak… - PloS one, 2014 - journals.plos.org
High-density SNP arrays for genome-wide assessment of allelic variation have made high
resolution genetic characterization of crop germplasm feasible. A medium density array for …

Next generation breeding

D Barabaschi, A Tondelli, F Desiderio, A Volante… - Plant Science, 2016 - Elsevier
The genomic revolution of the past decade has greatly improved our understanding of the
genetic make-up of living organisms. The sequencing of crop genomes has completely …

Exploiting wild relatives for genomics-assisted breeding of perennial crops

Z Migicovsky, S Myles - Frontiers in Plant Science, 2017 - frontiersin.org
Perennial crops are vital contributors to global food production and nutrition. However, the
breeding of new perennial crops is an expensive and time-consuming process due to the …

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa

NV Bassil, TM Davis, H Zhang, S Ficklin, M Mittmann… - BMC genomics, 2015 - Springer
Background A high-throughput genoty** platform is needed to enable marker-assisted
breeding in the allo-octoploid cultivated strawberry Fragaria× ananassa. Short-read …

Marker-assisted selection in breeding for fruit trait improvement: A review

G De Mori, G Cipriani - International Journal of Molecular Sciences, 2023 - mdpi.com
Breeding fruit species is time-consuming and expensive. With few exceptions, trees are
likely the worst species to work with in terms of genetics and breeding. Most are …