A review of progress in single particle tracking: from methods to biophysical insights

C Manzo, MF Garcia-Parajo - Reports on progress in physics, 2015 - iopscience.iop.org
Optical microscopy has for centuries been a key tool to study living cells with minimum
invasiveness. The advent of single molecule techniques over the past two decades has …

A guide to single-particle tracking

F Simon, LE Weiss, S van Teeffelen - Nature Reviews Methods Primers, 2024 - nature.com
Individual proteins and protein complexes undergo various motion types, including free
diffusion, confinement, subdiffusion and directed motion. Different motion behaviours reflect …

Objective comparison of methods to decode anomalous diffusion

G Muñoz-Gil, G Volpe, MA Garcia-March… - Nature …, 2021 - nature.com
Deviations from Brownian motion leading to anomalous diffusion are found in transport
dynamics from quantum physics to life sciences. The characterization of anomalous diffusion …

[HTML][HTML] Single-particle diffusion characterization by deep learning

N Granik, LE Weiss, E Nehme, M Levin, M Chein… - Biophysical journal, 2019 - cell.com
Diffusion plays a crucial role in many biological processes including signaling, cellular
organization, transport mechanisms, and more. Direct observation of molecular movement …

Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos

M Mir, MR Stadler, SA Ortiz, CE Hannon, MM Harrison… - Elife, 2018 - elifesciences.org
The regulation of transcription requires the coordination of numerous activities on DNA, yet
how transcription factors mediate these activities remains poorly understood. Here, we use …

Heterogeneous anomalous transport in cellular and molecular biology

TA Waigh, N Korabel - Reports on Progress in Physics, 2023 - iopscience.iop.org
It is well established that a wide variety of phenomena in cellular and molecular biology
involve anomalous transport eg the statistics for the motility of cells and molecules are …

[HTML][HTML] Non-Brownian diffusion in lipid membranes: Experiments and simulations

R Metzler, JH Jeon, AG Cherstvy - Biochimica et Biophysica Acta (BBA) …, 2016 - Elsevier
The dynamics of constituents and the surface response of cellular membranes—also in
connection to the binding of various particles and macromolecules to the membrane—are …

Plasma membrane preassociation drives β-arrestin coupling to receptors and activation

J Grimes, Z Koszegi, Y Lanoiselée, T Miljus, SL O'Brien… - Cell, 2023 - cell.com
Summary β-arrestin plays a key role in G protein-coupled receptor (GPCR) signaling and
desensitization. Despite recent structural advances, the mechanisms that govern receptor-β …

Real-time imaging of a single gene reveals transcription-initiated local confinement

T Germier, S Kocanova, N Walther, A Bancaud… - Biophysical journal, 2017 - cell.com
Genome dynamics are intimately linked to the regulation of gene expression, the most
fundamental mechanism in biology, yet we still do not know whether the very process of …

4D Single-particle tracking with asynchronous read-out single-photon avalanche diode array detector

A Bucci, G Tortarolo, MO Held, L Bega… - Nature …, 2024 - nature.com
Single-particle tracking techniques enable investigation of the complex functions and
interactions of individual particles in biological environments. Many such techniques exist …