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A genomic catalog of Earth's microbiomes
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated …
enabled insights into the ecology and evolution of environmental and host-associated …
The Fe(II)-oxidizing Zetaproteobacteria: historical, ecological and genomic perspectives
The Zetaproteobacteria are a class of bacteria typically associated with marine Fe (II)-
oxidizing environments. First discovered in the hydrothermal vents at Loihi Seamount …
oxidizing environments. First discovered in the hydrothermal vents at Loihi Seamount …
Genome-centric view of carbon processing in thawing permafrost
As global temperatures rise, large amounts of carbon sequestered in permafrost are
becoming available for microbial degradation. Accurate prediction of carbon gas emissions …
becoming available for microbial degradation. Accurate prediction of carbon gas emissions …
Biosynthetic potential of uncultured Antarctic soil bacteria revealed through long-read metagenomic sequencing
The growing problem of antibiotic resistance has led to the exploration of uncultured
bacteria as potential sources of new antimicrobials. PCR amplicon analyses and short-read …
bacteria as potential sources of new antimicrobials. PCR amplicon analyses and short-read …
Genomic exploration of coral-associated bacteria: identifying probiotic candidates to increase coral bleaching resilience in Galaxea fascicularis
Background Reef-building corals are acutely threatened by ocean warming, calling for
active interventions to reduce coral bleaching and mortality. Corals associate with a wide …
active interventions to reduce coral bleaching and mortality. Corals associate with a wide …
gcType: a high-quality type strain genome database for microbial phylogenetic and functional research
Taxonomic and functional research of microorganisms has increasingly relied upon genome-
based data and methods. As the depository of the Global Catalogue of Microorganisms …
based data and methods. As the depository of the Global Catalogue of Microorganisms …
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
Culture-independent methods have contributed substantially to our understanding of global
microbial diversity. Recently developed algorithms to construct whole genomes from …
microbial diversity. Recently developed algorithms to construct whole genomes from …
[HTML][HTML] The importance of designating type material for uncultured taxa
Naming of uncultured Bacteria and Archaea is often inconsistent with the International Code
of Nomenclature of Prokaryotes. The recent practice of proposing names for higher taxa …
of Nomenclature of Prokaryotes. The recent practice of proposing names for higher taxa …
[HTML][HTML] Effect of long-term farming practices on agricultural soil microbiome members represented by metagenomically assembled genomes (MAGs) and their …
To follow the hypothesis that agricultural management practices affect structure and function
of the soil microbiome regarding soil health and plant-beneficial traits, high-throughput (HT) …
of the soil microbiome regarding soil health and plant-beneficial traits, high-throughput (HT) …
Neutral theory, microbial practice: challenges in bacterial population genetics
I detail four major open problems in microbial population genetics with direct implications to
the study of molecular evolution: the lack of neutral polymorphism, the modeling of …
the study of molecular evolution: the lack of neutral polymorphism, the modeling of …