Accurate and complete genomes from metagenomes
Genomes are an integral component of the biological information about an organism; thus,
the more complete the genome, the more informative it is. Historically, bacterial and …
the more complete the genome, the more informative it is. Historically, bacterial and …
Next generation sequencing approaches to evaluate water and wastewater quality
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …
address complex microbiological challenges in the water industry. NGS technologies can …
Nitrogen cycling and microbial cooperation in the terrestrial subsurface
The nitrogen cycle plays a major role in aquatic nitrogen transformations, including in the
terrestrial subsurface. However, the variety of transformations remains understudied. To …
terrestrial subsurface. However, the variety of transformations remains understudied. To …
Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation
Abstract Background The Anaerolineae lineage of Chloroflexi had been identified as one of
the core microbial populations in anaerobic digesters; however, the ecological role of the …
the core microbial populations in anaerobic digesters; however, the ecological role of the …
Recovering complete and draft population genomes from metagenome datasets
Assembly of metagenomic sequence data into microbial genomes is of fundamental value to
improving our understanding of microbial ecology and metabolism by elucidating the …
improving our understanding of microbial ecology and metabolism by elucidating the …
Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages
Nitrogen, sulfur and carbon fluxes in the terrestrial subsurface are determined by the
intersecting activities of microbial community members, yet the organisms responsible are …
intersecting activities of microbial community members, yet the organisms responsible are …
Microbial community structure and function in sediments from e-waste contaminated rivers at Guiyu area of China
The release of toxic organic pollutants and heavy metals by primitive electronic waste (e-
waste) processing to waterways has raised significant concerns, but little is known about …
waste) processing to waterways has raised significant concerns, but little is known about …
Novel arsenic-transforming bacteria and the diversity of their arsenic-related genes and enzymes arising from arsenic-polluted freshwater sediment
MLS Suhadolnik, APC Salgado, LLS Scholte… - Scientific reports, 2017 - nature.com
Bacteria are essential in arsenic cycling. However, few studies have addressed 16S rRNA
and arsenic-related functional gene diversity in long-term arsenic-contaminated tropical …
and arsenic-related functional gene diversity in long-term arsenic-contaminated tropical …
MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation
Genome annotation is one of the key actions that must be undertaken in order to decipher
the genetic blueprint of organisms. Thus, a correct and reliable annotation is essential in …
the genetic blueprint of organisms. Thus, a correct and reliable annotation is essential in …
Bacterial community response to chronic heavy metal contamination in marine sediments of the East China Sea
H Chen, C Ji, H Hu, S Hu, S Yue, M Zhao - Environmental Pollution, 2022 - Elsevier
Marine sediments act as a sink for various heavy metals, which may have profound impact
on sedimentary microbiota. However, our knowledge about the collaborative response of …
on sedimentary microbiota. However, our knowledge about the collaborative response of …