Intrinsically disordered proteins and intrinsically disordered protein regions

CJ Oldfield, AK Dunker - Annual review of biochemistry, 2014 - annualreviews.org
Intrinsically disordered proteins (IDPs) and IDP regions fail to form a stable structure, yet
they exhibit biological activities. Their mobile flexibility and structural instability are encoded …

Origins of specificity in protein-DNA recognition

R Rohs, X **, SM West, R Joshi… - Annual review of …, 2010 - annualreviews.org
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Y Yin, E Morgunova, A Jolma, E Kaasinen, B Sahu… - Science, 2017 - science.org
INTRODUCTION Nearly all cells in the human body share the same primary genome
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …

DNA-dependent formation of transcription factor pairs alters their binding specificity

A Jolma, Y Yin, KR Nitta, K Dave, A Popov, M Taipale… - Nature, 2015 - nature.com
Gene expression is regulated by transcription factors (TFs), proteins that recognize short
DNA sequence motifs,,. Such sequences are very common in the human genome, and an …

[HTML][HTML] Hox genes in development and beyond

KA Hubert, DM Wellik - Development, 2023 - journals.biologists.com
Hox genes encode evolutionarily conserved transcription factors that are essential for the
proper development of bilaterian organisms. Hox genes are unique because they are …

The role of DNA shape in protein–DNA recognition

R Rohs, SM West, A Sosinsky, P Liu, RS Mann… - Nature, 2009 - nature.com
The recognition of specific DNA sequences by proteins is thought to depend on two types of
mechanism: one that involves the formation of hydrogen bonds with specific bases, primarily …

[HTML][HTML] Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins

M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala… - Cell, 2011 - cell.com
Members of transcription factor families typically have similar DNA binding specificities yet
execute unique functions in vivo. Transcription factors often bind DNA as multiprotein …

The role of Hox genes in female reproductive tract development, adult function, and fertility

H Du, HS Taylor - Cold Spring Harbor …, 2016 - perspectivesinmedicine.cshlp.org
HOX genes convey positional identity that leads to the proper partitioning and adult identity
of the female reproductive track. Abnormalities in reproductive tract development can be …

Mutations in the cardiac transcription factor NKX2.5 affect diverse cardiac developmental pathways

DW Benson, GM Silberbach… - The Journal of …, 1999 - Am Soc Clin Investig
Heterozygous mutations in NKX2. 5, a homeobox transcription factor, were reported to
cause secundum atrial septal defects and result in atrioventricular (AV) conduction block …

[HTML][HTML] Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

MB Noyes, RG Christensen, A Wakabayashi… - Cell, 2008 - cell.com
We describe the comprehensive characterization of homeodomain DNA-binding specificities
from a metazoan genome. The analysis of all 84 independent homeodomains from D …