Intrinsically disordered proteins and intrinsically disordered protein regions
Intrinsically disordered proteins (IDPs) and IDP regions fail to form a stable structure, yet
they exhibit biological activities. Their mobile flexibility and structural instability are encoded …
they exhibit biological activities. Their mobile flexibility and structural instability are encoded …
Origins of specificity in protein-DNA recognition
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …
processes. In this review, we provide a revised view of protein-DNA interactions that …
Impact of cytosine methylation on DNA binding specificities of human transcription factors
INTRODUCTION Nearly all cells in the human body share the same primary genome
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …
sequence consisting of four nucleotide bases. One of the bases, cytosine, is commonly …
DNA-dependent formation of transcription factor pairs alters their binding specificity
Gene expression is regulated by transcription factors (TFs), proteins that recognize short
DNA sequence motifs,,. Such sequences are very common in the human genome, and an …
DNA sequence motifs,,. Such sequences are very common in the human genome, and an …
[HTML][HTML] Hox genes in development and beyond
KA Hubert, DM Wellik - Development, 2023 - journals.biologists.com
Hox genes encode evolutionarily conserved transcription factors that are essential for the
proper development of bilaterian organisms. Hox genes are unique because they are …
proper development of bilaterian organisms. Hox genes are unique because they are …
The role of DNA shape in protein–DNA recognition
The recognition of specific DNA sequences by proteins is thought to depend on two types of
mechanism: one that involves the formation of hydrogen bonds with specific bases, primarily …
mechanism: one that involves the formation of hydrogen bonds with specific bases, primarily …
[HTML][HTML] Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
Members of transcription factor families typically have similar DNA binding specificities yet
execute unique functions in vivo. Transcription factors often bind DNA as multiprotein …
execute unique functions in vivo. Transcription factors often bind DNA as multiprotein …
The role of Hox genes in female reproductive tract development, adult function, and fertility
H Du, HS Taylor - Cold Spring Harbor …, 2016 - perspectivesinmedicine.cshlp.org
HOX genes convey positional identity that leads to the proper partitioning and adult identity
of the female reproductive track. Abnormalities in reproductive tract development can be …
of the female reproductive track. Abnormalities in reproductive tract development can be …
Mutations in the cardiac transcription factor NKX2.5 affect diverse cardiac developmental pathways
DW Benson, GM Silberbach… - The Journal of …, 1999 - Am Soc Clin Investig
Heterozygous mutations in NKX2. 5, a homeobox transcription factor, were reported to
cause secundum atrial septal defects and result in atrioventricular (AV) conduction block …
cause secundum atrial septal defects and result in atrioventricular (AV) conduction block …
[HTML][HTML] Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
MB Noyes, RG Christensen, A Wakabayashi… - Cell, 2008 - cell.com
We describe the comprehensive characterization of homeodomain DNA-binding specificities
from a metazoan genome. The analysis of all 84 independent homeodomains from D …
from a metazoan genome. The analysis of all 84 independent homeodomains from D …