Animal phylogeny and its evolutionary implications

CW Dunn, G Giribet, GD Edgecombe… - Annual review of …, 2014 - annualreviews.org
In recent years, scientists have made remarkable progress reconstructing the animal
phylogeny. There is broad agreement regarding many deep animal relationships, including …

The hidden biology of sponges and ctenophores

CW Dunn, SP Leys, SHD Haddock - Trends in ecology & evolution, 2015 - cell.com
Animal evolution is often presented as a march toward complexity, with different living
animal groups each representing grades of organization that arose through the progressive …

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination

TC Terwilliger, D Liebschner, TI Croll, CJ Williams… - Nature …, 2024 - nature.com
Artificial intelligence-based protein structure prediction methods such as AlphaFold have
revolutionized structural biology. The accuracies of these predictions vary, however, and …

Complexity of avian evolution revealed by family-level genomes

J Stiller, S Feng, AA Chowdhury, I Rivas-González… - Nature, 2024 - nature.com
Despite tremendous efforts in the past decades, relationships among main avian lineages
remain heavily debated without a clear resolution. Discrepancies have been attributed to …

Revisiting metazoan phylogeny with genomic sampling of all phyla

CE Laumer, R Fernández, S Lemer… - … of the royal …, 2019 - royalsocietypublishing.org
Proper biological interpretation of a phylogeny can sometimes hinge on the placement of
key taxa—or fail when such key taxa are not sampled. In this light, we here present the first …

A large and consistent phylogenomic dataset supports sponges as the sister group to all other animals

P Simion, H Philippe, D Baurain, M Jager, DJ Richter… - Current biology, 2017 - cell.com
Resolving the early diversification of animal lineages has proven difficult, even using
genome-scale datasets. Several phylogenomic studies have supported the classical …

Contentious relationships in phylogenomic studies can be driven by a handful of genes

XX Shen, CT Hittinger, A Rokas - Nature ecology & evolution, 2017 - nature.com
Phylogenomic studies have resolved countless branches of the tree of life, but remain
strongly contradictory on certain, contentious relationships. Here, we use a maximum …

A higher level classification of all living organisms

MA Ruggiero, DP Gordon, TM Orrell, N Bailly… - PloS one, 2015 - journals.plos.org
We present a consensus classification of life to embrace the more than 1.6 million species
already provided by more than 3,000 taxonomists' expert opinions in a unified and coherent …

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

CE Hinchliff, SA Smith, JF Allman, JG Burleigh… - Proceedings of the …, 2015 - pnas.org
Reconstructing the phylogenetic relationships that unite all lineages (the tree of life) is a
grand challenge. The paucity of homologous character data across disparately related …

The ctenophore genome and the evolutionary origins of neural systems

LL Moroz, KM Kocot, MR Citarella, S Dosung… - Nature, 2014 - nature.com
The origins of neural systems remain unresolved. In contrast to other basal metazoans,
ctenophores (comb jellies) have both complex nervous and mesoderm-derived muscular …