Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease
JOB Jacobsen, C Kelly, V Cipriani… - Human …, 2022 - Wiley Online Library
Rare disease diagnostics and disease gene discovery have been revolutionized by whole‐
exome and genome sequencing but identifying the causative variant (s) from the millions in …
exome and genome sequencing but identifying the causative variant (s) from the millions in …
[HTML][HTML] Proteogenomic characterization of primary colorectal cancer and metastatic progression identifies proteome-based subtypes and signatures
A Tanaka, M Ogawa, Y Zhou, K Namba… - Cell reports, 2024 - cell.com
Metastatic progression of colorectal adenocarcinoma (CRC) remains poorly understood and
poses significant challenges for treatment. To overcome these challenges, we performed …
poses significant challenges for treatment. To overcome these challenges, we performed …
Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
K Talsania, TW Shen, X Chen, E Jaeger, Z Li, Z Chen… - Genome biology, 2022 - Springer
Background The cancer genome is commonly altered with thousands of structural
rearrangements including insertions, deletions, translocation, inversions, duplications, and …
rearrangements including insertions, deletions, translocation, inversions, duplications, and …
PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants
Structural variants (SVs) represent a major source of genetic variation associated with
phenotypic diversity and disease susceptibility. While long-read sequencing can discover …
phenotypic diversity and disease susceptibility. While long-read sequencing can discover …
Genomic architecture of autism spectrum disorder in Qatar: The BARAKA-Qatar Study
Background Autism spectrum disorder (ASD) is a neurodevelopmental condition
characterized by impaired social and communication skills, restricted interests, and …
characterized by impaired social and communication skills, restricted interests, and …
Long-read sequencing improves the genetic diagnosis of retinitis pigmentosa by identifying an Alu retrotransposon insertion in the EYS gene
E Fernández-Suárez, M González-del Pozo… - Mobile DNA, 2024 - Springer
Background Biallelic variants in EYS are the major cause of autosomal recessive retinitis
pigmentosa (arRP) in certain populations, a clinically and genetically heterogeneous …
pigmentosa (arRP) in certain populations, a clinically and genetically heterogeneous …
Phase II trial of CDK4/6 inhibitor palbociclib in advanced sarcoma based on mRNA expression of CDK4/CDKN2A
Abstract Cyclin-dependent kinases 4 and 6 (CDK4/6) inhibitors demonstrated activity in
terms of progression-free survival (PFS) in advanced dedifferentiated liposarcoma (DD …
terms of progression-free survival (PFS) in advanced dedifferentiated liposarcoma (DD …
The AnnotSV webserver in 2023: updated visualization and ranking
Much of the human genetics variant repertoire is composed of single nucleotide variants
(SNV) and small insertion/deletions (indel) but structural variants (SV) remain a major part of …
(SNV) and small insertion/deletions (indel) but structural variants (SV) remain a major part of …
Discovery of novel predisposing coding and noncoding variants in familial Hodgkin lymphoma
Familial aggregation of Hodgkin lymphoma (HL) has been demonstrated in large population
studies, pointing to genetic predisposition to this hematological malignancy. To understand …
studies, pointing to genetic predisposition to this hematological malignancy. To understand …
Clinical utility of periodic reinterpretation of CNVs of uncertain significance: an 8-year retrospective study
Background Array-CGH is the first-tier genetic test both in pre-and postnatal developmental
disorders worldwide. Variants of uncertain significance (VUS) represent around 10~ 15% of …
disorders worldwide. Variants of uncertain significance (VUS) represent around 10~ 15% of …