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Everything is connected: Graph neural networks
P Veličković - Current Opinion in Structural Biology, 2023 - Elsevier
In many ways, graphs are the main modality of data we receive from nature. This is due to
the fact that most of the patterns we see, both in natural and artificial systems, are elegantly …
the fact that most of the patterns we see, both in natural and artificial systems, are elegantly …
A survey on graph neural networks for time series: Forecasting, classification, imputation, and anomaly detection
Time series are the primary data type used to record dynamic system measurements and
generated in great volume by both physical sensors and online processes (virtual sensors) …
generated in great volume by both physical sensors and online processes (virtual sensors) …
Machine learning for a sustainable energy future
Transitioning from fossil fuels to renewable energy sources is a critical global challenge; it
demands advances—at the materials, devices and systems levels—for the efficient …
demands advances—at the materials, devices and systems levels—for the efficient …
Self-driving laboratories for chemistry and materials science
Self-driving laboratories (SDLs) promise an accelerated application of the scientific method.
Through the automation of experimental workflows, along with autonomous experimental …
Through the automation of experimental workflows, along with autonomous experimental …
Multi-modal molecule structure–text model for text-based retrieval and editing
There is increasing adoption of artificial intelligence in drug discovery. However, existing
studies use machine learning to mainly utilize the chemical structures of molecules but …
studies use machine learning to mainly utilize the chemical structures of molecules but …
A comprehensive survey on deep graph representation learning
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …
structured data into low-dimensional dense vectors, which is a fundamental task that has …
Eqmotion: Equivariant multi-agent motion prediction with invariant interaction reasoning
Learning to predict agent motions with relationship reasoning is important for many
applications. In motion prediction tasks, maintaining motion equivariance under Euclidean …
applications. In motion prediction tasks, maintaining motion equivariance under Euclidean …
Uni-mol: A universal 3d molecular representation learning framework
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …
role in learning from limited supervised data for applications like drug design. In most MRL …
Torsional diffusion for molecular conformer generation
Molecular conformer generation is a fundamental task in computational chemistry. Several
machine learning approaches have been developed, but none have outperformed state-of …
machine learning approaches have been developed, but none have outperformed state-of …
Equibind: Geometric deep learning for drug binding structure prediction
Predicting how a drug-like molecule binds to a specific protein target is a core problem in
drug discovery. An extremely fast computational binding method would enable key …
drug discovery. An extremely fast computational binding method would enable key …