Transposable elements in mammalian chromatin organization

HA Lawson, Y Liang, T Wang - Nature Reviews Genetics, 2023 - nature.com
Transposable elements (TEs) are mobile DNA elements that comprise almost 50% of
mammalian genomic sequence. TEs are capable of making additional copies of themselves …

Sequence, chromatin and evolution of satellite DNA

J Thakur, J Packiaraj, S Henikoff - International journal of molecular …, 2021 - mdpi.com
Satellite DNA consists of abundant tandem repeats that play important roles in cellular
processes, including chromosome segregation, genome organization and chromosome end …

A reference genome for pea provides insight into legume genome evolution

J Kreplak, MA Madoui, P Cápal, P Novák, K Labadie… - Nature …, 2019 - nature.com
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …

Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2

P Novák, P Neumann, J Macas - Nature Protocols, 2020 - nature.com
RepeatExplorer2 is a novel version of a computational pipeline that uses graph-based
clustering of next-generation sequencing reads for characterization of repetitive DNA in …

Chloranthus genome provides insights into the early diversification of angiosperms

X Guo, D Fang, SK Sahu, S Yang, X Guang… - Nature …, 2021 - nature.com
Chloranthales remain the last major mesangiosperm lineage without a nuclear genome
assembly. We therefore assemble a high-quality chromosome-level genome of Chloranthus …

A mosaic monoploid reference sequence for the highly complex genome of sugarcane

O Garsmeur, G Droc, R Antonise, J Grimwood… - Nature …, 2018 - nature.com
Sugarcane (Saccharum spp.) is a major crop for sugar and bioenergy production. Its highly
polyploid, aneuploid, heterozygous, and interspecific genome poses major challenges for …

DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome

T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj… - Nature, 2017 - nature.com
Transposable elements are viewed as 'selfish genetic elements', yet they contribute to gene
regulation and genome evolution in diverse ways. More than half of the human genome …

Analyses of 600+ insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges

JS Sproul, S Hotaling, J Heckenhauer… - Genome …, 2023 - genome.cshlp.org
Repetitive elements (REs) are integral to the composition, structure, and function of
eukaryotic genomes, yet remain understudied in most taxonomic groups. We investigated …

Satellite DNA: an evolving topic

MA Garrido-Ramos - Genes, 2017 - mdpi.com
Satellite DNA represents one of the most fascinating parts of the repetitive fraction of the
eukaryotic genome. Since the discovery of highly repetitive tandem DNA in the 1960s, a lot …

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

K Du, M Stöck, S Kneitz, C Klopp… - Nature ecology & …, 2020 - nature.com
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …