BioRED: a rich biomedical relation extraction dataset

L Luo, PT Lai, CH Wei, CN Arighi… - Briefings in …, 2022 - academic.oup.com
Automated relation extraction (RE) from biomedical literature is critical for many downstream
text mining applications in both research and real-world settings. However, most existing …

Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Comparison of text preprocessing methods

CP Chai - Natural Language Engineering, 2023 - cambridge.org
Text preprocessing is not only an essential step to prepare the corpus for modeling but also
a key area that directly affects the natural language processing (NLP) application results. For …

PubTator central: automated concept annotation for biomedical full text articles

CH Wei, A Allot, R Leaman, Z Lu - Nucleic acids research, 2019 - academic.oup.com
Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …

Building a PubMed knowledge graph

J Xu, S Kim, M Song, M Jeong, D Kim, J Kang… - Scientific data, 2020 - nature.com
PubMed® is an essential resource for the medical domain, but useful concepts are either
difficult to extract or are ambiguous, which has significantly hindered knowledge discovery …

[HTML][HTML] NCBI disease corpus: a resource for disease name recognition and concept normalization

RI Doğan, R Leaman, Z Lu - Journal of biomedical informatics, 2014 - Elsevier
Abstract Information encoded in natural language in biomedical literature publications is
only useful if efficient and reliable ways of accessing and analyzing that information are …

Knowledge-informed semantic alignment and rule interpretation for automated compliance checking

Z Zheng, YC Zhou, XZ Lu, JR Lin - Automation in Construction, 2022 - Elsevier
As an essential prodecure to improve design quality in the construction industry, automated
rule checking (ARC) requires intelligent rule interpretation from regulatory texts and precise …

TaggerOne: joint named entity recognition and normalization with semi-Markov Models

R Leaman, Z Lu - Bioinformatics, 2016 - academic.oup.com
Motivation: Text mining is increasingly used to manage the accelerating pace of the
biomedical literature. Many text mining applications depend on accurate named entity …

DNorm: disease name normalization with pairwise learning to rank

R Leaman, R Islamaj Doğan, Z Lu - Bioinformatics, 2013 - academic.oup.com
Motivation: Despite the central role of diseases in biomedical research, there have been
much fewer attempts to automatically determine which diseases are mentioned in a text …

[KNJIGA][B] Handbook of natural language processing

N Indurkhya, FJ Damerau - 2010 - taylorfrancis.com
The Handbook of Natural Language Processing, Second Edition presents practical tools
and techniques for implementing natural language processing in computer systems. Along …