Antimicrobial resistance monitoring of water environments: a framework for standardized methods and quality control

K Liguori, I Keenum, BC Davis, J Calarco… - … science & technology, 2022‏ - ACS Publications
Antimicrobial resistance (AMR) is a grand societal challenge with important dimensions in
the water environment that contribute to its evolution and spread. Environmental monitoring …

Innovations in genomic antimicrobial resistance surveillance

NE Wheeler, V Price, E Cunningham-Oakes… - The Lancet …, 2023‏ - thelancet.com
Whole-genome sequencing of antimicrobial-resistant pathogens is increasingly being used
for antimicrobial resistance (AMR) surveillance, particularly in high-income countries …

Recommendations for the use of metagenomics for routine monitoring of antibiotic resistance in wastewater and impacted aquatic environments

BC Davis, C Brown, S Gupta, J Calarco… - Critical Reviews in …, 2023‏ - Taylor & Francis
Shotgun metagenomic sequencing of the collective genomic information carried across
microbial communities is emerging as a powerful approach for monitoring antibiotic …

Multi-omics data integration considerations and study design for biological systems and disease

S Graw, K Chappell, CL Washam, A Gies, J Bird… - Molecular omics, 2021‏ - pubs.rsc.org
With the advancement of next-generation sequencing and mass spectrometry, there is a
growing need for the ability to merge biological features in order to study a system as a …

[HTML][HTML] Associations of healthy food choices with gut microbiota profiles

KK Koponen, A Salosensaari, MO Ruuskanen… - The American Journal of …, 2021‏ - Elsevier
Background Diet has a major influence on the human gut microbiota, which has been linked
to health and disease. However, epidemiological studies on associations of a healthy diet …

[HTML][HTML] Improving the assessment of ecosystem and wildlife health: microbiome as an early indicator

MP Ribas, M García-Ulloa, J Espunyes… - Current opinion in …, 2023‏ - Elsevier
Highlights•Microbiome can be an early warning indicator of ecosystem and wildlife
health.•Microbiome responds to anthropogenic disturbances and management …

Next-generation food research: use of meta-omic approaches for characterizing microbial communities along the food chain

M Yap, D Ercolini, A Álvarez-Ordóñez… - Annual Review of …, 2022‏ - annualreviews.org
Microorganisms exist along the food chain and impact the quality and safety of foods in both
positive and negative ways. Identifying and understanding the behavior of these microbial …

[HTML][HTML] Systematic review of wastewater surveillance of antimicrobial resistance in human populations

KK Chau, L Barker, EP Budgell, KD Vihta, N Sims… - Environment …, 2022‏ - Elsevier
Objectives We systematically reviewed studies using wastewater for AMR surveillance in
human populations, to determine:(i) evidence of concordance between wastewater-human …

[HTML][HTML] Impacts of net cages on pollutant accumulation and its consequence on antibiotic resistance genes (ARGs) dissemination in freshwater ecosystems: insights …

M Wang, A Masoudi, C Wang, C Wu, Z Zhang… - Environment …, 2024‏ - Elsevier
There has been increasing interest in the role of human activities in disseminating antibiotic-
resistance genes (ARGs) in aquatic ecosystems. However, the influence of pollutant …

[HTML][HTML] Red raspberry and fructo-oligosaccharide supplementation, metabolic biomarkers, and the gut microbiota in adults with prediabetes: a randomized crossover …

X Zhang, A Zhao, AK Sandhu, I Edirisinghe… - The Journal of …, 2022‏ - Elsevier
Background Evidence suggests that the gut microbiota and cardiometabolic status are
associated, suggesting dietary interventions that alter the microbiota may affect metabolic …