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Mechanisms and regulation of alternative pre-mRNA splicing
Y Lee, DC Rio - Annual review of biochemistry, 2015 - annualreviews.org
Precursor messenger RNA (pre-mRNA) splicing is a critical step in the posttranscriptional
regulation of gene expression, providing significant expansion of the functional proteome of …
regulation of gene expression, providing significant expansion of the functional proteome of …
Nascent RNA analyses: tracking transcription and its regulation
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …
genome. Decoding of this information begins with regulated transcription of genomic DNA …
Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing
NM Martinez, A Su, MC Burns, JK Nussbacher… - Molecular cell, 2022 - cell.com
Pseudouridine is a modified nucleotide that is prevalent in human mRNAs and is
dynamically regulated. Here, we investigate when in their life cycle mRNAs become …
dynamically regulated. Here, we investigate when in their life cycle mRNAs become …
m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover
Understanding the biologic role of N 6-methyladenosine (m6A) RNA modifications in mRNA
requires an understanding of when and where in the life of a pre-mRNA transcript the …
requires an understanding of when and where in the life of a pre-mRNA transcript the …
Coupling mRNA processing with transcription in time and space
DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …
[HTML][HTML] Splicing kinetics and coordination revealed by direct nascent RNA sequencing through nanopores
HL Drexler, K Choquet, LS Churchman - Molecular cell, 2020 - cell.com
Understanding how splicing events are coordinated across numerous introns in metazoan
RNA transcripts requires quantitative analyses of transient RNA processing events in living …
RNA transcripts requires quantitative analyses of transient RNA processing events in living …
Intron retention as a component of regulated gene expression programs
Intron retention has long been an exemplar of regulated splicing with case studies of
individual events serving as models that provided key mechanistic insights into the process …
individual events serving as models that provided key mechanistic insights into the process …
Detained introns are a novel, widespread class of post-transcriptionally spliced introns
Deep sequencing of embryonic stem cell RNA revealed many specific internal introns that
are significantly more abundant than the other introns within polyadenylated transcripts; we …
are significantly more abundant than the other introns within polyadenylated transcripts; we …
G-quadruplex folding in **st RNA antagonizes PRC2 activity for stepwise regulation of X chromosome inactivation
How Polycomb repressive complex 2 (PRC2) is regulated by RNA remains an unsolved
problem. Although PRC2 binds G-tracts with the potential to form RNA G-quadruplexes …
problem. Although PRC2 binds G-tracts with the potential to form RNA G-quadruplexes …
Nuclear retention of mRNA in mammalian tissues
Summary mRNA is thought to predominantly reside in the cytoplasm, where it is translated
and eventually degraded. Although nuclear retention of mRNA has a regulatory potential, it …
and eventually degraded. Although nuclear retention of mRNA has a regulatory potential, it …