Mechanisms and regulation of alternative pre-mRNA splicing

Y Lee, DC Rio - Annual review of biochemistry, 2015 - annualreviews.org
Precursor messenger RNA (pre-mRNA) splicing is a critical step in the posttranscriptional
regulation of gene expression, providing significant expansion of the functional proteome of …

Nascent RNA analyses: tracking transcription and its regulation

EM Wissink, A Vihervaara, ND Tippens… - Nature Reviews …, 2019 - nature.com
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …

Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing

NM Martinez, A Su, MC Burns, JK Nussbacher… - Molecular cell, 2022 - cell.com
Pseudouridine is a modified nucleotide that is prevalent in human mRNAs and is
dynamically regulated. Here, we investigate when in their life cycle mRNAs become …

m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover

S Ke, A Pandya-Jones, Y Saito, JJ Fak… - Genes & …, 2017 - genesdev.cshlp.org
Understanding the biologic role of N 6-methyladenosine (m6A) RNA modifications in mRNA
requires an understanding of when and where in the life of a pre-mRNA transcript the …

Coupling mRNA processing with transcription in time and space

DL Bentley - Nature Reviews Genetics, 2014 - nature.com
Maturation of mRNA precursors often occurs simultaneously with their synthesis by RNA
polymerase II (Pol II). The co-transcriptional nature of mRNA processing has permitted the …

[HTML][HTML] Splicing kinetics and coordination revealed by direct nascent RNA sequencing through nanopores

HL Drexler, K Choquet, LS Churchman - Molecular cell, 2020 - cell.com
Understanding how splicing events are coordinated across numerous introns in metazoan
RNA transcripts requires quantitative analyses of transient RNA processing events in living …

Intron retention as a component of regulated gene expression programs

AG Jacob, CWJ Smith - Human genetics, 2017 - Springer
Intron retention has long been an exemplar of regulated splicing with case studies of
individual events serving as models that provided key mechanistic insights into the process …

Detained introns are a novel, widespread class of post-transcriptionally spliced introns

PL Boutz, A Bhutkar, PA Sharp - Genes & development, 2015 - genesdev.cshlp.org
Deep sequencing of embryonic stem cell RNA revealed many specific internal introns that
are significantly more abundant than the other introns within polyadenylated transcripts; we …

G-quadruplex folding in **st RNA antagonizes PRC2 activity for stepwise regulation of X chromosome inactivation

YW Lee, U Weissbein, R Blum, JT Lee - Molecular Cell, 2024 - cell.com
How Polycomb repressive complex 2 (PRC2) is regulated by RNA remains an unsolved
problem. Although PRC2 binds G-tracts with the potential to form RNA G-quadruplexes …

Nuclear retention of mRNA in mammalian tissues

KB Halpern, I Caspi, D Lemze, M Levy, S Landen… - Cell reports, 2015 - cell.com
Summary mRNA is thought to predominantly reside in the cytoplasm, where it is translated
and eventually degraded. Although nuclear retention of mRNA has a regulatory potential, it …