An introduction to biological NMR spectroscopy

D Marion - Molecular & Cellular Proteomics, 2013 - mcponline.org
NMR spectroscopy is a powerful tool for biologists interested in the structure, dynamics, and
interactions of biological macromolecules. This review aims at presenting in an accessible …

Practically Useful: What the Rosetta Protein Modeling Suite Can Do for You

KW Kaufmann, GH Lemmon, SL DeLuca… - Biochemistry, 2010 - ACS Publications
The objective of this review is to enable researchers to use the software package Rosetta for
biochemical and biomedicinal studies. We provide a brief review of the six most frequent …

Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2

TR Alderson, I Pritišanac, Đ Kolarić, AM Moses… - Proceedings of the …, 2023 - pnas.org
The AlphaFold Protein Structure Database contains predicted structures for millions of
proteins. For the majority of human proteins that contain intrinsically disordered regions …

Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks

Y Shen, A Bax - Journal of biomolecular NMR, 2013 - Springer
Abstract A new program, TALOS-N, is introduced for predicting protein backbone torsion
angles from NMR chemical shifts. The program relies far more extensively on the use of …

Structural and functional characterization of two alpha-synuclein strains

L Bousset, L Pieri, G Ruiz-Arlandis, J Gath… - Nature …, 2013 - nature.com
Abstract α-synuclein aggregation is implicated in a variety of diseases including Parkinson's
disease, dementia with Lewy bodies, pure autonomic failure and multiple system atrophy …

[HTML][HTML] Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a

KL Yap, S Li, AM Muñoz-Cabello, S Raguz, L Zeng… - Molecular cell, 2010 - cell.com
Expression of the INK4b/ARF/INK4a tumor suppressor locus in normal and cancerous cell
growth is controlled by methylation of histone H3 at lysine 27 (H3K27me) as directed by the …

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

Y Shen, F Delaglio, G Cornilescu, A Bax - Journal of biomolecular NMR, 2009 - Springer
NMR chemical shifts in proteins depend strongly on local structure. The program TALOS
establishes an empirical relation between 13 C, 15 N and 1 H chemical shifts and backbone …

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)

S Lyskov, FC Chou, SO Conchuir, BS Der, K Drew… - PloS one, 2013 - journals.plos.org
The Rosetta molecular modeling software package provides experimentally tested and
rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins …

Self-propagating, molecular-level polymorphism in Alzheimer's β-amyloid fibrils

AT Petkova, RD Leapman, Z Guo, WM Yau… - Science, 2005 - science.org
Amyloid fibrils commonly exhibit multiple distinct morphologies in electron microscope and
atomic force microscope images, often within a single image field. By using electron …

Structure of the chemokine receptor CXCR1 in phospholipid bilayers

SH Park, BB Das, F Casagrande, Y Tian, HJ Nothnagel… - Nature, 2012 - nature.com
CXCR1 is one of two high-affinity receptors for the CXC chemokine interleukin-8 (IL-8), a
major mediator of immune and inflammatory responses implicated in many disorders …