Determinants of nucleosome positioning

K Struhl, E Segal - Nature structural & molecular biology, 2013 - nature.com
Nucleosome positioning is critical for gene expression and most DNA-related processes.
Here we review the dominant patterns of nucleosome positioning that have been observed …

Meldola Lecture. The role of aromatic interactions in molecular recognition

CA Hunter - Chemical Society Reviews, 1994 - pubs.rsc.org
Interactions between aromatic molecules represent an important class of intermolecular
force in chemistry, biology, and materials science. They control a range of molecular …

Sequence periodicities in chicken nucleosome core DNA

SC Satchwell, HR Drew, AA Travers - Journal of molecular biology, 1986 - Elsevier
The rotational positioning of DNA about the histone octamer appears to be determined by
certain sequence-dependent modulations of DNA structure. To establish the detailed nature …

The structure of an oligo (dA)· oligo (dT) tract and its biological implications

HCM Nelson, JT Finch, BF Luisi, A Klug - Nature, 1987 - nature.com
Abstract Poly (dA)· poly (dT) has unusual properties in that it cannot associate into
nucleosomes and short, phased runs of it cause DNA bending. The crystal structure of a B …

Mechanisms for the prevention of damage to DNA in spores of Bacillus species

P Setlow - Annual review of microbiology, 1995 - go.gale.com
The high degree of DNA protection provides the specialized cells of Bacillus species
resistance to damaging treatments including dessication, heat and radiation and a variety of …

Poly (dA: dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

V Iyer, K Struhl - The EMBO journal, 1995 - embopress.org
Many yeast promoters contain homopolymeric dA: dT sequences that affect nucleosome
formation in vitro and are required for wild‐type levels of transcription in vivo. Here, we show …

The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution

K Phillips, Z Dauter, AIH Murchie, DMJ Lilley… - Journal of molecular …, 1997 - Elsevier
In both DNA and RNA, stretches of guanine bases can form stable four-stranded helices in
the presence of sodium or potassium ions. Sequences with a propensity to form guanine …

DNA conformation is determined by economics in the hydration of phosphate groups

W Saenger, WN Hunter, O Kennard - Nature, 1986 - nature.com
Mixed sequence DNA can exist in two right-handed and one left-handed double helical
conformations—A, B and Z1–3. Under conditions of high water activity the B conformation …

Self-assembled DNA networks and their electrical conductivity

L Cai, H Tabata, T Kawai - Applied Physics Letters, 2000 - pubs.aip.org
We report direct measurements of the intrinsic electrical characteristics of polynucleotides
using a conducting-probe atomic-force microscope under vacuum. Poly (dA)⋅ poly (dT) self …

Structure of DNase I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA

D Suck, C Oefner - Nature, 1986 - nature.com
Bovine pancreatic deoxyribonuclease I (DNase I), an endonuclease that degrades double-
stranded DNA in a nonspecific but sequence-dependent manner1–4, has been used as a …