Replication–transcription conflicts in bacteria

H Merrikh, Y Zhang, AD Grossman… - Nature Reviews …, 2012 - nature.com
DNA replication and transcription use the same template and occur concurrently in bacteria.
The lack of temporal and spatial separation of these two processes leads to their conflict …

Bacterial transcription as a target for antibacterial drug development

C Ma, X Yang, PJ Lewis - Microbiology and Molecular Biology …, 2016 - journals.asm.org
Transcription, the first step of gene expression, is carried out by the enzyme RNA
polymerase (RNAP) and is regulated through interaction with a series of protein transcription …

Application of targeted mass spectrometry in bottom-up proteomics for systems biology research

NP Manes, A Nita-Lazar - Journal of proteomics, 2018 - Elsevier
The enormous diversity of proteoforms produces tremendous complexity within cellular
proteomes, facilitates intricate networks of molecular interactions, and constitutes a …

SubtiWiki 2.0—an integrated database for the model organism Bacillus subtilis

RH Michna, B Zhu, U Mäder, J Stülke - Nucleic acids research, 2016 - academic.oup.com
To understand living cells, we need knowledge of each of their parts as well as about the
interactions of these parts. To gain rapid and comprehensive access to this information …

Desiccation induces varied responses within a soil bacterial genus

NC Scales, KT Huynh, C Weihe… - Environmental …, 2023 - Wiley Online Library
Desiccation impacts a suite of physiological processes in microbes by elevating levels of
damaging reactive oxygen species and inducing DNA strand breaks. In response to …

Bacillus subtilis σV Confers Lysozyme Resistance by Activation of Two Cell Wall Modification Pathways, Peptidoglycan O-Acetylation and d-Alanylation of Teichoic …

V Guariglia-Oropeza, JD Helmann - Journal of bacteriology, 2011 - journals.asm.org
The seven extracytoplasmic function (ECF) sigma (σ) factors of Bacillus subtilis are broadly
implicated in resistance to antibiotics and other cell envelope stressors mediated, in part, by …

Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis

T Rochat, P Nicolas, O Delumeau… - Nucleic acids …, 2012 - academic.oup.com
The transcriptional regulator Spx plays a key role in maintaining the redox homeostasis of
Bacillus subtilis cells exposed to disulfide stress. Defects in Spx were previously shown to …

SubtiWiki—a comprehensive community resource for the model organism Bacillus subtilis

U Mäder, AG Schmeisky, LA Florez… - Nucleic acids …, 2012 - academic.oup.com
In the post-genomic era, most components of a cell are known and they can be quantified by
large-scale functional genomics approaches. However, genome annotation is the bottleneck …

RIP-seq reveals RNAs that interact with RNA polymerase and primary sigma factors in bacteria

V Vaňková Hausnerová, M Shoman… - Nucleic Acids …, 2024 - academic.oup.com
Bacteria have evolved structured RNAs that can associate with RNA polymerase (RNAP).
Two of them have been known so far—6S RNA and Ms1 RNA but it is unclear if any other …

Atropisomeric dihydroanthracenones as inhibitors of multiresistant Staphylococcus aureus

R Bara, I Zerfass, AH Aly… - Journal of medicinal …, 2013 - ACS Publications
Two bisdihydroanthracenone atropodiastereomeric pairs, including homodimeric
flavomannin A (1) and the previously unreported flavomannin B (2), two new unsymmetrical …