Prime editing for precise and highly versatile genome manipulation

PJ Chen, DR Liu - Nature Reviews Genetics, 2023 - nature.com
Programmable gene-editing tools have transformed the life sciences and have shown
potential for the treatment of genetic disease. Among the CRISPR–Cas technologies that …

[HTML][HTML] High-content CRISPR screening

C Bock, P Datlinger, F Chardon, MA Coelho… - Nature Reviews …, 2022 - nature.com
CRISPR screens are a powerful source of biological discovery, enabling the unbiased
interrogation of gene function in a wide range of applications and species. In pooled …

Current progress and open challenges for applying deep learning across the biosciences

N Sapoval, A Aghazadeh, MG Nute… - Nature …, 2022 - nature.com
Deep Learning (DL) has recently enabled unprecedented advances in one of the grand
challenges in computational biology: the half-century-old problem of protein structure …

Engineered pegRNAs improve prime editing efficiency

JW Nelson, PB Randolph, SP Shen, KA Everette… - Nature …, 2022 - nature.com
Prime editing enables the installation of virtually any combination of point mutations, small
insertions or small deletions in the DNA of living cells. A prime editing guide RNA (pegRNA) …

Algorithms to estimate Shapley value feature attributions

H Chen, IC Covert, SM Lundberg, SI Lee - Nature Machine Intelligence, 2023 - nature.com
Feature attributions based on the Shapley value are popular for explaining machine
learning models. However, their estimation is complex from both theoretical and …

[HTML][HTML] The CRISPR-Cas toolbox and gene editing technologies

G Liu, Q Lin, S **, C Gao - Molecular cell, 2022 - cell.com
The emergence of CRISPR-Cas systems has accelerated the development of gene editing
technologies, which are widely used in the life sciences. To improve the performance of …

Predicting prime editing efficiency and product purity by deep learning

N Mathis, A Allam, L Kissling, KF Marquart… - Nature …, 2023 - nature.com
Prime editing is a versatile genome editing tool but requires experimental optimization of the
prime editing guide RNA (pegRNA) to achieve high editing efficiency. Here we conducted a …

Prime editing: advances and therapeutic applications

Z Zhao, P Shang, P Mohanraju, N Geijsen - Trends in Biotechnology, 2023 - cell.com
Clustered regularly interspaced short palindromic repeats-associated protein 9 (CRISPR–
Cas)-mediated genome editing has revolutionized biomedical research and will likely …

[HTML][HTML] Phage-assisted evolution and protein engineering yield compact, efficient prime editors

JL Doman, S Pandey, ME Neugebauer, M An, JR Davis… - Cell, 2023 - cell.com
Prime editing enables a wide variety of precise genome edits in living cells. Here we use
protein evolution and engineering to generate prime editors with reduced size and improved …

High-efficiency prime editing with optimized, paired pegRNAs in plants

Q Lin, S **, Y Zong, H Yu, Z Zhu, G Liu, L Kou… - Nature …, 2021 - nature.com
Prime editing (PE) applications are limited by low editing efficiency. Here we show that
designing prime binding sites with a melting temperature of 30° C leads to optimal …