A review of molecular representation in the age of machine learning

DS Wigh, JM Goodman… - Wiley Interdisciplinary …, 2022 - Wiley Online Library
Research in chemistry increasingly requires interdisciplinary work prompted by, among
other things, advances in computing, machine learning, and artificial intelligence. Everyone …

Bayesian optimization for chemical products and functional materials

K Wang, AW Dowling - Current Opinion in Chemical Engineering, 2022 - Elsevier
The design of chemical-based products and functional materials is vital to modern
technologies, yet remains expensive and slow. Artificial intelligence and machine learning …

Sample efficiency matters: a benchmark for practical molecular optimization

W Gao, T Fu, J Sun, C Coley - Advances in neural …, 2022 - proceedings.neurips.cc
Molecular optimization is a fundamental goal in the chemical sciences and is of central
interest to drug and material design. In recent years, significant progress has been made in …

Accelerating bayesian optimization for biological sequence design with denoising autoencoders

S Stanton, W Maddox, N Gruver… - International …, 2022 - proceedings.mlr.press
Bayesian optimization (BayesOpt) is a gold standard for query-efficient continuous
optimization. However, its adoption for drug design has been hindered by the discrete, high …

A survey on high-dimensional Gaussian process modeling with application to Bayesian optimization

M Binois, N Wycoff - ACM Transactions on Evolutionary Learning and …, 2022 - dl.acm.org
Bayesian Optimization (BO), the application of Bayesian function approximation to finding
optima of expensive functions, has exploded in popularity in recent years. In particular, much …

Local latent space bayesian optimization over structured inputs

N Maus, H Jones, J Moore, MJ Kusner… - Advances in neural …, 2022 - proceedings.neurips.cc
Bayesian optimization over the latent spaces of deep autoencoder models (DAEs) has
recently emerged as a promising new approach for optimizing challenging black-box …

Perspective: Machine learning in experimental solid mechanics

NR Brodnik, C Muir, N Tulshibagwale, J Rossin… - Journal of the …, 2023 - Elsevier
Experimental solid mechanics is at a pivotal point where machine learning (ML) approaches
are rapidly proliferating into the discovery process due to significant advances in data …

GAUCHE: a library for Gaussian processes in chemistry

RR Griffiths, L Klarner, H Moss… - Advances in …, 2023 - proceedings.neurips.cc
We introduce GAUCHE, an open-source library for GAUssian processes in CHEmistry.
Gaussian processes have long been a cornerstone of probabilistic machine learning …

The behavior and convergence of local bayesian optimization

K Wu, K Kim, R Garnett… - Advances in neural …, 2024 - proceedings.neurips.cc
A recent development in Bayesian optimization is the use of local optimization strategies,
which can deliver strong empirical performance on high-dimensional problems compared to …

Are random decompositions all we need in high dimensional Bayesian optimisation?

JK Ziomek, HB Ammar - International Conference on …, 2023 - proceedings.mlr.press
Learning decompositions of expensive-to-evaluate black-box functions promises to scale
Bayesian optimisation (BO) to high-dimensional problems. However, the success of these …