Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health
Metabolic activities of the microbial population are important to maintain the balance of
almost all the ecosystems on earth. In the human gut environment, these microbial …
almost all the ecosystems on earth. In the human gut environment, these microbial …
Plant growth-promoting bacteria of soil: designing of consortia beneficial for crop production
Plant growth-promoting bacteria are commonly used in agriculture, particularly for seed
inoculation. Multispecies consortia are believed to be the most promising form of these …
inoculation. Multispecies consortia are believed to be the most promising form of these …
Microbial community metabolic modeling: a community data‐driven network reconstruction
Metabolic network modeling of microbial communities provides an in‐depth understanding
of community‐wide metabolic and regulatory processes. Compared to single organism …
of community‐wide metabolic and regulatory processes. Compared to single organism …
Mechanistic models of microbial community metabolism
Microbial communities affect many facets of human health and well-being. Naturally
occurring bacteria, whether in nature or the human body, rarely exist in isolation. A deeper …
occurring bacteria, whether in nature or the human body, rarely exist in isolation. A deeper …
Flux sampling in genome-scale metabolic modeling of microbial communities
Background Microbial communities play a crucial role in ecosystem function through
metabolic interactions. Genome-scale modeling is a promising method to understand these …
metabolic interactions. Genome-scale modeling is a promising method to understand these …
Emerging methods for genome-scale metabolic modeling of microbial communities
Genome-scale metabolic models (GEMs) are consolidating as platforms for studying mixed
microbial populations, by combining biological data and knowledge with mathematical rigor …
microbial populations, by combining biological data and knowledge with mathematical rigor …
Constraint-based modeling in microbial food biotechnology
Genome-scale metabolic network reconstruction offers a means to leverage the value of the
exponentially growing genomics data and integrate it with other biological knowledge in a …
exponentially growing genomics data and integrate it with other biological knowledge in a …
[HTML][HTML] Characterization of oil extracted from wild apricot seeds kernel using submerged alcoholic fermentation and its quality characteristics
The current study investigated the impact of Saccharomyces cerevisiae fermentation on
apricot kernel oil extraction and the resulting quality characteristics of the oil. The seed …
apricot kernel oil extraction and the resulting quality characteristics of the oil. The seed …
Metabolic network modeling for computer‐aided design of microbial interactions
Interest in applying microbial communities to biotechnology continues to increase.
Successful engineering of microbial communities requires a fundamental shift in focus from …
Successful engineering of microbial communities requires a fundamental shift in focus from …
Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome
Abstract The DOE Systems Biology Knowledgebase (KBase) platform offers a range of
powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic …
powerful tools for the reconstruction, refinement, and analysis of genome-scale metabolic …