Advancing cancer research and medicine with single-cell genomics

B Lim, Y Lin, N Navin - Cancer cell, 2020‏ - cell.com
Single-cell sequencing (SCS) has impacted many areas of cancer research and improved
our understanding of intratumor heterogeneity, the tumor microenvironment, metastasis, and …

Single-cell multiomics: multiple measurements from single cells

IC Macaulay, CP Ponting, T Voet - Trends in genetics, 2017‏ - cell.com
Single-cell sequencing provides information that is not confounded by genotypic or
phenotypic heterogeneity of bulk samples. Sequencing of one molecular type (RNA …

[HTML][HTML] Ordered and deterministic cancer genome evolution after p53 loss

T Baslan, JP Morris IV, Z Zhao, J Reyes, YJ Ho… - Nature, 2022‏ - nature.com
Although p53 inactivation promotes genomic instability and presents a route to malignancy
for more than half of all human cancers,, the patterns through which heterogenous TP53 …

Somatic genomic changes in single Alzheimer's disease neurons

MB Miller, AY Huang, J Kim, Z Zhou, SL Kirkham… - Nature, 2022‏ - nature.com
Dementia in Alzheimer's disease progresses alongside neurodegeneration,,–, but the
specific events that cause neuronal dysfunction and death remain poorly understood. During …

Delineating copy number and clonal substructure in human tumors from single-cell transcriptomes

R Gao, S Bai, YC Henderson, Y Lin, A Schalck… - Nature …, 2021‏ - nature.com
Single-cell transcriptomic analysis is widely used to study human tumors. However, it
remains challenging to distinguish normal cell types in the tumor microenvironment from …

Chemoresistance evolution in triple-negative breast cancer delineated by single-cell sequencing

C Kim, R Gao, E Sei, R Brandt, J Hartman, T Hatschek… - Cell, 2018‏ - cell.com
Triple-negative breast cancer (TNBC) is an aggressive subtype that frequently develops
resistance to chemotherapy. An unresolved question is whether resistance is caused by the …

Human glioblastoma arises from subventricular zone cells with low-level driver mutations

JH Lee, JE Lee, JY Kahng, SH Kim, JS Park, SJ Yoon… - Nature, 2018‏ - nature.com
Glioblastoma (GBM) is a devastating and incurable brain tumour, with a median overall
survival of fifteen months,. Identifying the cell of origin that harbours mutations that drive …

Toward minimal residual disease-directed therapy in melanoma

F Rambow, A Rogiers, O Marin-Bejar, S Aibar, J Femel… - Cell, 2018‏ - cell.com
Many patients with advanced cancers achieve dramatic responses to a panoply of
therapeutics yet retain minimal residual disease (MRD), which ultimately results in relapse …

Breast tumours maintain a reservoir of subclonal diversity during expansion

DC Minussi, MD Nicholson, H Ye, A Davis, K Wang… - Nature, 2021‏ - nature.com
Our knowledge of copy number evolution during the expansion of primary breast tumours is
limited,. Here, to investigate this process, we developed a single-cell, single-molecule DNA …

Tumor cell-intrinsic factors underlie heterogeneity of immune cell infiltration and response to immunotherapy

J Li, KT Byrne, F Yan, T Yamazoe, Z Chen, T Baslan… - Immunity, 2018‏ - cell.com
The biological and functional heterogeneity between tumors—both across and within cancer
types—poses a challenge for immunotherapy. To understand the factors underlying tumor …