A guide to single-particle tracking

F Simon, LE Weiss, S van Teeffelen - Nature Reviews Methods Primers, 2024 - nature.com
Individual proteins and protein complexes undergo various motion types, including free
diffusion, confinement, subdiffusion and directed motion. Different motion behaviours reflect …

Constructing a cost-efficient, high-throughput and high-quality single-molecule localization microscope for super-resolution imaging

JSH Danial, JYL Lam, Y Wu, M Woolley, E Dimou… - Nature …, 2022 - nature.com
Single-molecule localization microscopy (SMLM) leverages the power of modern optics to
unleash ultra-precise structural nanoscopy of complex biological machines in their native …

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software

D Sage, TA Pham, H Babcock, T Lukes, T Pengo… - Nature …, 2019 - nature.com
With the widespread uptake of two-dimensional (2D) and three-dimensional (3D) single-
molecule localization microscopy (SMLM), a large set of different data analysis packages …

On the value of preprints: An early career researcher perspective

S Sarabipour, HJ Debat, E Emmott, SJ Burgess… - PLoS …, 2019 - journals.plos.org
Peer-reviewed journal publication is the main means for academic researchers in the life
sciences to create a permanent public record of their work. These publications are also the …

Continuous biomarker monitoring with single molecule resolution by measuring free particle motion

AD Buskermolen, YT Lin, L van Smeden… - Nature …, 2022 - nature.com
There is a need for sensing technologies that can continuously monitor concentration levels
of critical biomolecules in applications such as patient care, fundamental biological …

Reversible immunosensor for the continuous monitoring of cortisol in blood plasma sampled with microdialysis

L van Smeden, A Saris, K Sergelen, AM de Jong… - ACS …, 2022 - ACS Publications
Cortisol is a steroid hormone involved in a wide range of medical conditions. The level of the
hormone fluctuates over time, but with traditional laboratory-based assays, such dynamics …

Single-molecule imaging of LexA degradation in Escherichia coli elucidates regulatory mechanisms and heterogeneity of the SOS response

EC Jones, S Uphoff - Nature microbiology, 2021 - nature.com
The bacterial SOS response represents a paradigm of gene networks controlled by a master
transcriptional regulator. Self-cleavage of the SOS repressor LexA induces a wide range of …

About samples, giving examples: optimized single molecule localization microscopy

A Jimenez, K Friedl, C Leterrier - Methods, 2020 - Elsevier
Super-resolution microscopy has profoundly transformed how we study the architecture of
cells, revealing unknown structures and refining our view of cellular assemblies. Among the …

Genome concentration limits cell growth and modulates proteome composition in Escherichia coli

J Mäkelä, A Papagiannakis, WH Lin, MC Lanz, S Glenn… - Elife, 2024 - elifesciences.org
Defining the cellular factors that drive growth rate and proteome composition is essential for
understanding and manipulating cellular systems. In bacteria, ribosome concentration is …

Cargo-specific recruitment in clathrin-and dynamin-independent endocytosis

P Moreno-Layseca, NZ Jäntti, R Godbole… - Nature cell …, 2021 - nature.com
Spatially controlled, cargo-specific endocytosis is essential for development, tissue
homeostasis and cancer invasion. Unlike cargo-specific clathrin-mediated endocytosis, the …