The tRNA identity landscape for aminoacylation and beyond

R Giegé, G Eriani - Nucleic Acids Research, 2023 - academic.oup.com
Abstract tRNAs are key partners in ribosome-dependent protein synthesis. This process is
highly dependent on the fidelity of tRNA aminoacylation by aminoacyl-tRNA synthetases …

Beyond the anticodon: tRNA core modifications and their impact on structure, translation and stress adaptation

MJ Yared, A Marcelot, P Barraud - Genes, 2024 - mdpi.com
Transfer RNAs (tRNAs) are heavily decorated with post-transcriptional chemical
modifications. Approximately 100 different modifications have been identified in tRNAs, and …

The Pol III transcriptome: basic features, recurrent patterns, and emerging roles in cancer

S Zhou, K Van Bortle - Wiley Interdisciplinary Reviews: RNA, 2023 - Wiley Online Library
Abstract The RNA polymerase III (Pol III) transcriptome is universally comprised of short,
highly structured noncoding RNA (ncRNA). Through RNA–protein interactions, the Pol III …

tRNA engineering strategies for genetic code expansion

YJ Kim, S Cho, JC Kim, HS Park - Frontiers in Genetics, 2024 - frontiersin.org
The advancement of genetic code expansion (GCE) technology is attributed to the
establishment of specific aminoacyl-tRNA synthetase/tRNA pairs. While earlier …

Advances in methods for tRNA sequencing and quantification

NH Padhiar, U Katneni, AA Komar, Y Motorin… - Trends in Genetics, 2024 - cell.com
In the past decade tRNA sequencing (tRNA-seq) has attracted considerable attention as an
important tool for the development of novel approaches to quantify highly modified tRNA …

Identification of Inosine and 2′-O-Methylinosine Modifications in Yeast Messenger RNA by Liquid Chromatography–Tandem Mass Spectrometry Analysis

YJ Feng, XJ You, JH Ding, YF Zhang, BF Yuan… - Analytical …, 2022 - ACS Publications
The discovery of reversible modifications in messenger RNA (mRNA) opens new research
directions in RNA modification-mediated epigenetic regulation. Yeast is an extensively used …

The RNA polymerase III–RIG-I axis in antiviral immunity and inflammation

L Naesens, F Haerynck, MU Gack - Trends in immunology, 2023 - cell.com
Nucleic acid sensors survey subcellular compartments for atypical or mislocalized RNA or
DNA, ultimately triggering innate immune responses. Retinoic acid-inducible gene-I (RIG-I) …

Microplastic exposure is associated with epigenomic effects in the model organism Pimephales promelas (fathead minnow)

MJ Wade, K Bucci, CM Rochman… - Journal of Heredity, 2024 - academic.oup.com
Microplastics have evolutionary and ecological impacts across species, affecting organisms'
development, reproduction, and behavior along with contributing to genotoxicity and stress …

[HTML][HTML] Cell-type-specific expression of tRNAs in the brain regulates cellular homeostasis

M Kapur, MJ Molumby, C Guzman, S Heinz… - Neuron, 2024 - cell.com
Defects in tRNA biogenesis are associated with multiple neurological disorders, yet our
understanding of these diseases has been hampered by an inability to determine tRNA …

Functional redundancy in tRNA dihydrouridylation

C Sudol, LM Kilz, V Marchand, Q Thullier… - Nucleic Acids …, 2024 - academic.oup.com
Dihydrouridine (D) is a common modified base found predominantly in transfer RNA (tRNA).
Despite its prevalence, the mechanisms underlying dihydrouridine biosynthesis, particularly …