Two-photon calcium imaging of neuronal activity

C Grienberger, A Giovannucci, W Zeiger… - Nature Reviews …, 2022 - nature.com
In vivo two-photon calcium imaging (2PCI) is a technique used for recording neuronal
activity in the intact brain. It is based on the principle that, when neurons fire action …

Activity-regulated transcription: bridging the gap between neural activity and behavior

EL Yap, ME Greenberg - Neuron, 2018 - cell.com
Gene transcription is the process by which the genetic codes of organisms are read and
interpreted as a set of instructions for cells to divide, differentiate, migrate, and mature. As …

[HTML][HTML] Fast and sensitive GCaMP calcium indicators for imaging neural populations

Y Zhang, M Rózsa, Y Liang, D Bushey, Z Wei, J Zheng… - Nature, 2023 - nature.com
Calcium imaging with protein-based indicators, is widely used to follow neural activity in
intact nervous systems, but current protein sensors report neural activity at timescales much …

Fast online deconvolution of calcium imaging data

J Friedrich, P Zhou, L Paninski - PLoS computational biology, 2017 - journals.plos.org
Fluorescent calcium indicators are a popular means for observing the spiking activity of
large neuronal populations, but extracting the activity of each neuron from raw fluorescence …

Computational analysis of behavior

SER Egnor, K Branson - Annual review of neuroscience, 2016 - annualreviews.org
In this review, we discuss the emerging field of computational behavioral analysis—the use
of modern methods from computer science and engineering to quantitatively measure …

Thalamus drives vocal onsets in the zebra finch courtship song

FW Moll, D Kranz, A Corredera Asensio, M Elmaleh… - Nature, 2023 - nature.com
While motor cortical circuits contain information related to specific movement parameters,
long-range inputs also have a critical role in action execution,. Thalamic projections can …

Unsupervised discovery of temporal sequences in high-dimensional datasets, with applications to neuroscience

EL Mackevicius, AH Bahle, AH Williams, S Gu… - Elife, 2019 - elifesciences.org
Identifying low-dimensional features that describe large-scale neural recordings is a major
challenge in neuroscience. Repeated temporal patterns (sequences) are thought to be a …

An open source, wireless capable miniature microscope system

WA Liberti, LN Perkins, DP Leman… - Journal of neural …, 2017 - iopscience.iop.org
Objective. Fluorescence imaging through head-mounted microscopes in freely behaving
animals is becoming a standard method to study neural circuit function. Flexible, open …

Choice-selective sequences dominate in cortical relative to thalamic inputs to NAc to support reinforcement learning

NF Parker, A Baidya, J Cox, LM Haetzel… - Cell reports, 2022 - cell.com
How are actions linked with subsequent outcomes to guide choices? The nucleus
accumbens, which is implicated in this process, receives glutamatergic inputs from the …

Neuronal ensembles: Building blocks of neural circuits

R Yuste, R Cossart, E Yaksi - Neuron, 2024 - cell.com
Neuronal ensembles, defined as groups of neurons displaying recurring patterns of
coordinated activity, represent an intermediate functional level between individual neurons …