A guide to phylogenetic metrics for conservation, community ecology and macroecology

CM Tucker, MW Cadotte, SB Carvalho… - Biological …, 2017 - Wiley Online Library
The use of phylogenies in ecology is increasingly common and has broadened our
understanding of biological diversity. Ecological sub‐disciplines, particularly conservation …

Ecological diversity: measuring the unmeasurable

AJ Daly, JM Baetens, B De Baets - Mathematics, 2018 - mdpi.com
Diversity is a concept central to ecology, and its measurement is essential for any study of
ecosystem health. But summarizing this complex and multidimensional concept in a single …

Unifying species diversity, phylogenetic diversity, functional diversity, and related similarity and differentiation measures through Hill numbers

A Chao, CH Chiu, L Jost - Annual review of ecology, evolution …, 2014 - annualreviews.org
Hill numbers or the effective number of species are increasingly used to quantify species
diversity of an assemblage. Hill numbers were recently extended to phylogenetic diversity …

DNA barcodes for ecology, evolution, and conservation

WJ Kress, C García-Robledo, M Uriarte… - Trends in ecology & …, 2015 - cell.com
The use of DNA barcodes, which are short gene sequences taken from a standardized
portion of the genome and used to identify species, is entering a new phase of application …

The return of the variance: intraspecific variability in community ecology

C Violle, BJ Enquist, BJ McGill, LIN Jiang… - Trends in ecology & …, 2012 - cell.com
Despite being recognized as a promoter of diversity and a condition for local coexistence
decades ago, the importance of intraspecific variance has been neglected over time in …

Phylogenetic patterns are not proxies of community assembly mechanisms (they are far better)

P Gerhold, JF Cahill Jr, M Winter, IV Bartish… - Functional …, 2015 - Wiley Online Library
The subdiscipline of 'community phylogenetics' is rapidly growing and influencing thinking
regarding community assembly. In particular, phylogenetic dispersion of co‐occurring …

[LIVRE][B] Functional and phylogenetic ecology in R

NG Swenson - 2014 - Springer
The hypotheses that have been derived to explain the distribution, abundance, dynamics,
and diversity of species are typically tested using data matrices containing the names and …

The merging of community ecology and phylogenetic biology

J Cavender‐Bares, KH Kozak, PVA Fine… - Ecology …, 2009 - Wiley Online Library
The increasing availability of phylogenetic data, computing power and informatics tools has
facilitated a rapid expansion of studies that apply phylogenetic data and methods to …

A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity

H Tuomisto - Ecography, 2010 - Wiley Online Library
The term beta diversity has been used to refer to a wide variety of phenomena. Although all
of these encompass some kind of compositional heterogeneity between places, many are …

Measuring biodiversity to explain community assembly: a unified approach

S Pavoine, MB Bonsall - Biological Reviews, 2011 - Wiley Online Library
One of the oldest challenges in ecology is to understand the processes that underpin the
composition of communities. Historically, an obvious way in which to describe community …