Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

A genomic perspective on hybridization and speciation

BA Payseur, LH Rieseberg - Molecular ecology, 2016 - Wiley Online Library
Hybridization among diverging lineages is common in nature. Genomic data provide a
special opportunity to characterize the history of hybridization and the genetic basis of …

Haplotype-resolved genome assembly provides insights into evolutionary history of the tea plant Camellia sinensis

X Zhang, S Chen, L Shi, D Gong, S Zhang, Q Zhao… - Nature Genetics, 2021 - nature.com
Tea is an important global beverage crop and is largely clonally propagated. Despite
previous studies on the species, its genetic and evolutionary history deserves further …

Dsuite ‐ Fast D‐statistics and related admixture evidence from VCF files

M Malinsky, M Matschiner… - Molecular ecology …, 2021 - Wiley Online Library
Patterson's D, also known as the ABBA‐BABA statistic, and related statistics such as the f4‐
ratio, are commonly used to assess evidence of gene flow between populations or closely …

Triticum population sequencing provides insights into wheat adaptation

Y Zhou, X Zhao, Y Li, J Xu, A Bi, L Kang, D Xu… - Nature …, 2020 - nature.com
Bread wheat expanded its habitat from a core area of the Fertile Crescent to global
environments within~ 10,000 years. The genetic mechanisms of this remarkable …

Ancient hybridization fuels rapid cichlid fish adaptive radiations

JI Meier, DA Marques, S Mwaiko, CE Wagner… - Nature …, 2017 - nature.com
Understanding why some evolutionary lineages generate exceptionally high species
diversity is an important goal in evolutionary biology. Haplochromine cichlid fishes of Africa's …

Population genomics unravels the Holocene history of bread wheat and its relatives

X Zhao, Y Guo, L Kang, C Yin, A Bi, D Xu, Z Zhang… - Nature Plants, 2023 - nature.com
Deep knowledge of crop biodiversity is essential to improving global food security. Despite
bread wheat serving as a keystone crop worldwide, the population history of bread wheat …

The complete and fully-phased diploid genome of a male Han Chinese

C Yang, Y Zhou, Y Song, D Wu, Y Zeng, L Nie, P Liu… - Cell Research, 2023 - nature.com
Since the release of the complete human genome, the priority of human genomic study has
now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased …

Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits

S Guo, S Zhao, H Sun, X Wang, S Wu, T Lin, Y Ren… - Nature …, 2019 - nature.com
Fruit characteristics of sweet watermelon are largely the result of human selection. Here we
report an improved watermelon reference genome and whole-genome resequencing of 414 …

Genomic architecture and introgression shape a butterfly radiation

NB Edelman, PB Frandsen, M Miyagi, B Clavijo… - Science, 2019 - science.org
We used 20 de novo genome assemblies to probe the speciation history and architecture of
gene flow in rapidly radiating Heliconius butterflies. Our tests to distinguish incomplete …