Field programmable gate array applications—A scientometric review
Field Programmable Gate Array (FPGA) is a general purpose programmable logic device
that can be configured by a customer after manufacturing to perform from a simple logic gate …
that can be configured by a customer after manufacturing to perform from a simple logic gate …
High performance biological pairwise sequence alignment: FPGA versus GPU versus cell BE versus GPP
This paper explores the pros and cons of reconfigurable computing in the form of FPGAs for
high performance efficient computing. In particular, the paper presents the results of a …
high performance efficient computing. In particular, the paper presents the results of a …
Unexpected means of protocol inference
Network managers are inevitably called upon to associate network traffic with particular
applications. Indeed, this operation is critical for a wide range of management functions …
applications. Indeed, this operation is critical for a wide range of management functions …
A highly parameterized and efficient FPGA-based skeleton for pairwise biological sequence alignment
K Benkrid, Y Liu, AS Benkrid - IEEE Transactions on Very Large …, 2009 - ieeexplore.ieee.org
This paper presents the design and implementation of the most parameterisable field-
programmable gate array (FPGA)-based skeleton for pairwise biological sequence …
programmable gate array (FPGA)-based skeleton for pairwise biological sequence …
FPGASW: accelerating large-scale Smith–Waterman sequence alignment application with backtracking on FPGA linear systolic array
X Fei, Z Dan, L Lina, M ** algorithm
We present the first accelerated implementation of BWA-MEM, a popular genome sequence
alignment algorithm widely used in next generation sequencing genomics pipelines. The …
alignment algorithm widely used in next generation sequencing genomics pipelines. The …
Bio-sequence database scanning on a GPU
W Liu, B Schmidt, G Voss, A Schroder… - … Parallel & Distributed …, 2006 - ieeexplore.ieee.org
Protein sequences with unknown functionality are often compared to a set of known
sequences to detect functional similarities. Efficient dynamic programming algorithms exist …
sequences to detect functional similarities. Efficient dynamic programming algorithms exist …
Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm
The fast decrease in cost of DNA sequencing has resulted in an enormous growth in
available genome data, and hence led to an increasing demand for fast DNA analysis …
available genome data, and hence led to an increasing demand for fast DNA analysis …