Evolution and function of chromatin domains across the tree of life

MF Szalay, B Majchrzycka, I Jerković… - Nature Structural & …, 2024 - nature.com
The genome of all organisms is spatially organized to function efficiently. The advent of
genome-wide chromatin conformation capture (Hi-C) methods has revolutionized our ability …

The hagfish genome and the evolution of vertebrates

F Marlétaz, N Timoshevskaya, VA Timoshevskiy… - Nature, 2024 - nature.com
As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a crucial
window into early vertebrate evolution,–. Here we investigate the complex history, timing …

Emerging questions on the mechanisms and dynamics of 3D genome evolution in spiralians

TF Rogers, O Simakov - Briefings in functional genomics, 2023 - academic.oup.com
Abstract Information on how 3D genome topology emerged in animal evolution, how stable it
is during development, its role in the evolution of phenotypic novelties and how exactly it …

Convergent gene losses and pseudogenizations in multiple lineages of stomachless fishes

A Kato, S Pipil, C Ota, M Kusakabe… - Communications …, 2024 - nature.com
The regressive evolution of independent lineages often results in convergent phenotypes.
Several teleost groups display secondary loss of the stomach, and four gastric genes, atp4a …

Elasmobranch genome sequencing reveals evolutionary trends of vertebrate karyotype organization

K Yamaguchi, Y Uno, M Kadota, O Nishimura… - Genome …, 2023 - genome.cshlp.org
Genomic studies of vertebrate chromosome evolution have long been hindered by the
scarcity of chromosome-scale DNA sequences of some key taxa. One of those limiting taxa …

The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases …

H Mayeur, J Leyhr, J Mulley, N Leurs… - Molecular biology …, 2024 - academic.oup.com
Cartilaginous fishes (chondrichthyans: chimeras and elasmobranchs-sharks, skates, and
rays) hold a key phylogenetic position to explore the origin and diversifications of jawed …

Evolutionary patterns and functional effects of 3D chromatin structures in butterflies with extensive genome rearrangements

B Zhou, P Hu, G Liu, Z Chang, Z Dong, Z Li… - Nature …, 2024 - nature.com
Chromosome rearrangements may distort 3D chromatin architectures and thus change gene
regulation, yet how 3D chromatin structures evolve in insects is largely unknown. Here, we …

Comparative genomics illuminates karyotype and sex chromosome evolution of sharks

J Wu, F Liu, J Jiao, H Luo, S Fan, J Liu, H Wang, N Cui… - Cell Genomics, 2024 - cell.com
Chondrichthyes is an important lineage to reconstruct the evolutionary history of vertebrates.
Here, we analyzed genome synteny for six chondrichthyan chromosome-level genomes …

Evolutionary trends in the elasmobranch neurocranium

JH Gayford, MD Brazeau, GJP Naylor - Scientific Reports, 2024 - nature.com
The neurocranium (braincase) is one of the defining vertebrate characters. Housing the
brain and other key sensory organs, articulating with the jaws and contributing to the shape …

Endocrine control of gill ionocyte function in euryhaline fishes

JP Breves, CA Shaughnessy - Journal of Comparative Physiology B, 2024 - Springer
The endocrine system is an essential regulator of the osmoregulatory organs that enable
euryhaline fishes to maintain hydromineral balance in a broad range of environmental …