Artificial intelligence in cancer target identification and drug discovery

Y You, X Lai, Y Pan, H Zheng, J Vera, S Liu… - … and Targeted Therapy, 2022 - nature.com
Artificial intelligence is an advanced method to identify novel anticancer targets and discover
novel drugs from biology networks because the networks can effectively preserve and …

Coevolution spreading in complex networks

W Wang, QH Liu, J Liang, Y Hu, T Zhou - Physics Reports, 2019 - Elsevier
The propagations of diseases, behaviors and information in real systems are rarely
independent of each other, but they are coevolving with strong interactions. To uncover the …

Unification of theoretical approaches for epidemic spreading on complex networks

W Wang, M Tang, HE Stanley… - Reports on progress in …, 2017 - iopscience.iop.org
Abstract Models of epidemic spreading on complex networks have attracted great attention
among researchers in physics, mathematics, and epidemiology due to their success in …

Eigenvector-based centrality measures for temporal networks

D Taylor, SA Myers, A Clauset, MA Porter… - Multiscale Modeling & …, 2017 - SIAM
Numerous centrality measures have been developed to quantify the importances of nodes in
time-independent networks, and many of them can be expressed as the leading eigenvector …

[LIVRE][B] The nature of complex networks

SN Dorogovtsev, JFF Mendes - 2022 - books.google.com
The Nature of Complex Networks provides a systematic introduction to the statistical
mechanics of complex networks and the different theoretical achievements in the field that …

Hyper-cores promote localization and efficient seeding in higher-order processes

M Mancastroppa, I Iacopini, G Petri, A Barrat - Nature Communications, 2023 - nature.com
Going beyond networks, to include higher-order interactions of arbitrary sizes, is a major
step to better describe complex systems. In the resulting hypergraph representation, tools to …

Visualizing and characterizing excited states from time-dependent density functional theory

JM Herbert - Physical Chemistry Chemical Physics, 2024 - pubs.rsc.org
Time-dependent density functional theory (TD-DFT) is the most widely-used electronic
structure method for excited states, due to a favorable combination of low cost and semi …

Accuracy of discrete-and continuous-time mean-field theories for epidemic processes on complex networks

DH Silva, FA Rodrigues, SC Ferreira - Physical Review E, 2024 - APS
Discrete-and continuous-time approaches are frequently used to model the role of
heterogeneity on dynamical interacting agents on the top of complex networks. While, on the …

Does the brain behave like a (complex) network? I. Dynamics

D Papo, JM Buldú - Physics of Life Reviews, 2023 - Elsevier
Graph theory is now becoming a standard tool in system-level neuroscience. However,
endowing observed brain anatomy and dynamics with a complex network structure does not …

Grokking modular arithmetic

A Gromov - arxiv preprint arxiv:2301.02679, 2023 - arxiv.org
We present a simple neural network that can learn modular arithmetic tasks and exhibits a
sudden jump in generalization known as``grokking''. Concretely, we present (i) fully …