SlicerMorph: An open and extensible platform to retrieve, visualize and analyse 3D morphology

S Rolfe, S Pieper, A Porto, K Diamond… - Methods in Ecology …, 2021 - Wiley Online Library
Large‐scale digitization projects such as# ScanAllFishes and oVert are generating high‐
resolution microCT scans of vertebrates by the thousands. Data from these projects are …

Gaussian process landmarking on manifolds

T Gao, SZ Kovalsky, I Daubechies - SIAM Journal on Mathematics of Data …, 2019 - SIAM
As a means of improving analysis of biological shapes, we propose an algorithm for
sampling a Riemannian manifold by sequentially selecting points with maximum uncertainty …

A statistical pipeline for identifying physical features that differentiate classes of 3D shapes

B Wang, T Sudijono, H Kirveslahti, T Gao… - The Annals of Applied …, 2021 - projecteuclid.org
A statistical pipeline for identifying physical features that differentiate classes of 3D shapes
Page 1 The Annals of Applied Statistics 2021, Vol. 15, No. 2, 638–661 https://doi.org/10.1214/20-AOAS1430 …

Cohesion and repulsion in Bayesian distance clustering

A Natarajan, M De Iorio, A Heinecke… - Journal of the …, 2024 - Taylor & Francis
Clustering in high-dimensions poses many statistical challenges. While traditional distance-
based clustering methods are computationally feasible, they lack probabilistic interpretation …

Learning theory convergence rates for observers and controllers in native space embedding

J Burns, A Kurdila, D Oesterheld… - 2023 American …, 2023 - ieeexplore.ieee.org
This paper derives rates of convergence of approximations of observers and controllers
arising in the native space embedding method for adaptive estimation and control of a class …

[PDF][PDF] Randomness and statistical inference of shapes via the smooth Euler characteristic transform

K Meng, J Wang, L Crawford… - arxiv preprint arxiv …, 2022 - researchgate.net
In this paper, we provide the mathematical foundations for the randomness of shapes and
the distributions of smooth Euler characteristic transform. Based on these foundations, we …

The geometry of synchronization problems and learning group actions

T Gao, J Brodzki, S Mukherjee - Discrete & Computational Geometry, 2021 - Springer
We develop a geometric framework, based on the classical theory of fibre bundles, to
characterize the cohomological nature of a large class of synchronization-type problems in …

Studying Morphological Variation: Exploring the Shape Space in Evolutionary Anthropology

S Faigenbaum-Golovin, I Daubechies - arxiv preprint arxiv:2410.20040, 2024 - arxiv.org
We present results of a long-term team collaboration of mathematicians and biologists. We
focus on building a mathematical framework for the shape space constituted by a collection …

The diffusion geometry of fibre bundles: Horizontal diffusion maps

T Gao - Applied and Computational Harmonic Analysis, 2021 - Elsevier
Kernel-based nonlinear dimensionality reduction methods, such as Local Linear Embedding
(LLE) and Laplacian Eigenmaps, rely heavily upon pairwise distances or similarity scores …

Randomness of Shapes and Statistical Inference on Shapes via the Smooth Euler Characteristic Transform

K Meng, J Wang, L Crawford… - Journal of the American …, 2024 - Taylor & Francis
In this article, we establish the mathematical foundations for modeling the randomness of
shapes and conducting statistical inference on shapes using the smooth Euler characteristic …