Unraveling microbial interactions in food fermentations: from classical to genomics approaches

S Sieuwerts, FAM De Bok, J Hugenholtz… - Applied and …, 2008 - journals.asm.org
Fermentation, the microbial degradation of organic compounds without net oxidation, is an
important process in the global carbon cycle and is also exploited worldwide for the …

[HTML][HTML] Optimization and scale-up of fermentation processes driven by models

YH Du, MY Wang, LH Yang, LL Tong, DS Guo, XJ Ji - Bioengineering, 2022 - mdpi.com
In the era of sustainable development, the use of cell factories to produce various
compounds by fermentation has attracted extensive attention; however, industrial …

[HTML][HTML] GC-MS-based 13C metabolic flux analysis resolves the parallel and cyclic glucose metabolism of Pseudomonas putida KT2440 and Pseudomonas …

M Kohlstedt, C Wittmann - Metabolic engineering, 2019 - Elsevier
The genus Pseudomonas comprises approximately 200 species with numerous isolates that
are common inhabitants of soil, water, and vegetation and has been of particular interest for …

Corynebacterial protein kinase G controls 2-oxoglutarate dehydrogenase activity via the phosphorylation status of the OdhI protein

A Niebisch, A Kabus, C Schultz, B Weil, M Bott - Journal of Biological …, 2006 - jbc.org
A novel regulatory mechanism for control of the ubiquitous 2-oxoglutarate dehydrogenase
complex (ODH), a key enzyme of the tricarboxylic acid cycle, was discovered in the …

EMILiO: a fast algorithm for genome-scale strain design

L Yang, WR Cluett, R Mahadevan - Metabolic engineering, 2011 - Elsevier
Abstract Systems-level design of cell metabolism is becoming increasingly important for
renewable production of fuels, chemicals, and drugs. Computational models are improving …

Modelling strategies for the industrial exploitation of lactic acid bacteria

B Teusink, EJ Smid - Nature Reviews Microbiology, 2006 - nature.com
Lactic acid bacteria (LAB) have a long tradition of use in the food industry, and the number
and diversity of their applications has increased considerably over the years. Traditionally …

Glutamate production by Corynebacterium glutamicum: dependence on the oxoglutarate dehydrogenase inhibitor protein OdhI and protein kinase PknG

C Schultz, A Niebisch, L Gebel, M Bott - Applied microbiology and …, 2007 - Springer
We recently showed that the activity of the 2-oxoglutarate dehydrogenase complex (ODHC)
in Corynebacterium glutamicum is controlled by a novel regulatory mechanism that involves …

Corynebacterium glutamicum for Sustainable Bioproduction: From Metabolic Physiology to Systems Metabolic Engineering

J Becker, G Gießelmann, SL Hoffmann… - Synthetic biology …, 2018 - Springer
Since its discovery 60 years ago, Corynebacterium glutamicum has evolved into a
workhorse for industrial biotechnology. Traditionally well known for its remarkable capacity …

Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum

Y Shinfuku, N Sorpitiporn, M Sono, C Furusawa… - Microbial cell …, 2009 - Springer
Background In silico genome-scale metabolic models enable the analysis of the
characteristics of metabolic systems of organisms. In this study, we reconstructed a genome …

Emerging Corynebacterium glutamicum systems biology

VF Wendisch, M Bott, J Kalinowski, M Oldiges… - Journal of …, 2006 - Elsevier
Corynebacterium glutamicum is widely used for the biotechnological production of amino
acids. Amino acid producing strains have been improved classically by mutagenesis and …