Using PhyloSuite for molecular phylogeny and tree‐based analyses

CY **ang, F Gao, I Jakovlić, HP Lei, Y Hu, H Zhang… - Imeta, 2023 - Wiley Online Library
Phylogenetic analysis has entered the genomics (multilocus) era. For less experienced
researchers, conquering the large number of software programs required for a multilocus …

The Cytochrome b Gene as a Phylogenetic Marker: The Limits of Resolution for Analyzing Relationships Among Cichlid Fishes

IP Farias, G Ortí, I Sampaio, H Schneider… - Journal of molecular …, 2001 - Springer
The mitochondrial cytochrome b (cyt-b) gene is widely used in systematic studies to resolve
divergences at many taxonomic levels. The present study focuses mainly on the utility of cyt …

Phylogenetic hypotheses for the turtle family Geoemydidae

PQ Spinks, HB Shaffer, JB Iverson… - Molecular phylogenetics …, 2004 - Elsevier
The turtle family Geoemydidae represents the largest, most diverse, and most poorly
understood family of turtles. Little is known about this group, including intrafamilial …

PATRISTIC: a program for calculating patristic distances and graphically comparing the components of genetic change

M Fourment, MJ Gibbs - BMC evolutionary biology, 2006 - Springer
Background Phylogenies are commonly used to analyse the differences between genes,
genomes and species. Patristic distances calculated from tree branch lengths describe the …

Molecular phylogeny of the gobioid fishes (Teleostei: Perciformes: Gobioidei)

CE Thacker - Molecular phylogenetics and evolution, 2003 - Elsevier
The phylogeny of groups within Gobioidei is examined with molecular sequence data.
Gobioidei is a speciose, morphologically diverse group of teleost fishes, most of which are …

Total evidence, sequence alignment, evolution of polychrotid lizards, and a reclassification of the Iguania (Squamata: Iguania)

DR Frost, R Etheridge, D Janies, TA Titus - American Museum Novitates, 2001 - BioOne
Using the techniques of direct optimization and sensitivity analysis, the phylogenetics of
polychrotid lizards were examined on the basis of both molecular and morphological data …

Phylogenetics of the lizard genus Tropidurus (Squamata: Tropiduridae: Tropidurinae): direct optimization, descriptive efficiency, and sensitivity analysis of congruence …

DR Frost, MT Rodrigues, T Grant, TA Titus - Molecular phylogenetics and …, 2001 - Elsevier
By use of the technique of direct optimization the phylogenetics of the cis-Andean lizard
genus Tropidurus were examined on the basis of both molecular (ca. 1.04 kb of sequences …

A review of the systematics and taxonomy of Pythonidae: an ancient serpent lineage

DG Barker, TM Barker, MA Davis… - Zoological Journal of …, 2015 - academic.oup.com
Here we review research over the past quarter century regarding the systematics and
taxonomy of an ancient, popular and economically valuable group of snakes referred to as …

Molecular phylogenetic evidence for a mimetic radiation in Peruvian poison frogs supports a Müllerian mimicry hypothesis

R Symula, R Schulte… - Proceedings of the …, 2001 - royalsocietypublishing.org
Examples of Müllerian mimicry, in which resemblance between unpalatable species confers
mutual benefit, are rare in vertebrates. Strong comparative evidence for mimicry is found …

Phylogeny of Trichoptera (caddisflies): characterization of signal and noise within multiple datasets

KM Kjer, RJ Blahnik, RW Holzenthal - Systematic Biology, 2001 - academic.oup.com
Trichoptera are holometabolous insects with aquatic larvae that, together with the
Lepidoptera, make up the Amphiesmenoptera. Despite extensive previous morphological …