Compared to other data‐intensive disciplines such as genomics, public deposition and
storage of MS‐based proteomics, data are still less developed due to, among other reasons …

Sharing of research data in public repositories has become best practice in academia. With
the accumulation of massive data, network bandwidth and storage requirements are rapidly …

Abstract The PRoteomics IDEntifications (PRIDE) database is one of the world-leading data
repositories of mass spectrometry (MS)-based proteomics data. Since the beginning of …

Metaproteomics was established to analyse both the structure and the function of microbial
communities and, particularly in soils, their contribution to ecosystem services. In this review …

Individual resources can join ProteomeXchange by implementing the ProteomeXchange
data submission and dissemination guidelines, and metadata requirements. In the current …

The mission of the Universal Protein Resource (UniProt)(http://www. uniprot. org) is to
provide the scientific community with a comprehensive, high-quality and freely accessible …

Figure 1 PeptideShaker data-analysis cycle.(a) Data generated in-house or publicly
available from PRIDE can be used as input.(b) The sequence database is selected in …

Background The shift from solitary to social behavior is one of the major evolutionary
transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution …

The HUPO Proteomics Standards Initiative has developed several standardized data
formats to facilitate data sharing in mass spectrometry (MS)-based proteomics. These allow …

Data-dependent acquisition (DDA) methods are the current standard for quantitative
proteomics in many biological systems. However, DDA preferentially measures highly …