Shared molecular mechanisms of membrane transporters

D Drew, O Boudker - Annual review of biochemistry, 2016 - annualreviews.org
The determination of the crystal structures of small-molecule transporters has shed light on
the conformational changes that take place during structural isomerization from outward-to …

A brief history of protein sorting prediction

H Nielsen, KD Tsirigos, S Brunak, G von Heijne - The protein journal, 2019 - Springer
Ever since the signal hypothesis was proposed in 1971, the exact nature of signal peptides
has been a focus point of research. The prediction of signal peptides and protein subcellular …

Structure and mechanogating of the mammalian tactile channel PIEZO2

L Wang, H Zhou, M Zhang, W Liu, T Deng, Q Zhao, Y Li… - Nature, 2019 - nature.com
PIEZO2 is a mechanosensitive cation channel that has a key role in sensing touch, tactile
pain, breathing and blood pressure. Here we describe the cryo-electron microscopy …

Structure-based membrane dome mechanism for Piezo mechanosensitivity

YR Guo, R MacKinnon - elife, 2017 - elifesciences.org
Mechanosensitive ion channels convert external mechanical stimuli into electrochemical
signals for critical processes including touch sensation, balance, and cardiovascular …

Folding and misfolding of human membrane proteins in health and disease: from single molecules to cellular proteostasis

JT Marinko, H Huang, WD Penn, JA Capra… - Chemical …, 2019 - ACS Publications
Advances over the past 25 years have revealed much about how the structural properties of
membranes and associated proteins are linked to the thermodynamics and kinetics of …

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

A Krogh, B Larsson, G Von Heijne… - Journal of molecular …, 2001 - Elsevier
We describe and validate a new membrane protein topology prediction method, TMHMM,
based on a hidden Markov model. We present a detailed analysis of TMHMM's performance …

The Genome Sequence of Drosophila melanogaster

MD Adams, SE Celniker, RA Holt, CA Evans… - Science, 2000 - science.org
The fly Drosophila melanogaster is one of the most intensively studied organisms in biology
and serves as a model system for the investigation of many developmental and cellular …

[PDF][PDF] A hidden Markov model for predicting transmembrane helices in protein sequences.

ELL Sonnhammer, G Von Heijne, A Krogh - Ismb, 1998 - cdn.aaai.org
A novel method to model and predict the location and orientation of alpha helices in
membrane-spanning proteins is presented. It is based on a hidden Markov model (HMM) …

A combined transmembrane topology and signal peptide prediction method

L Käll, A Krogh, ELL Sonnhammer - Journal of molecular biology, 2004 - Elsevier
An inherent problem in transmembrane protein topology prediction and signal peptide
prediction is the high similarity between the hydrophobic regions of a transmembrane helix …

Major facilitator superfamily

SS Pao, IT Paulsen, MH Saier Jr - Microbiology and molecular …, 1998 - Am Soc Microbiol
The major facilitator superfamily (MFS) is one of the two largest families of membrane
transporters found on Earth. It is present ubiquitously in bacteria, archaea, and eukarya and …