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CD8+ T cell differentiation and dysfunction in cancer
M Philip, A Schietinger - Nature Reviews Immunology, 2022 - nature.com
CD8+ T cells specific for cancer cells are detected within tumours. However, despite their
presence, tumours progress. The clinical success of immune checkpoint blockade and …
presence, tumours progress. The clinical success of immune checkpoint blockade and …
The immune epitope database and analysis resource in epitope discovery and synthetic vaccine design
The task of epitope discovery and vaccine design is increasingly reliant on bioinformatics
analytic tools and access to depositories of curated data relevant to immune reactions and …
analytic tools and access to depositories of curated data relevant to immune reactions and …
Pan-cancer proteogenomics expands the landscape of therapeutic targets
Fewer than 200 proteins are targeted by cancer drugs approved by the Food and Drug
Administration (FDA). We integrate Clinical Proteomic Tumor Analysis Consortium (CPTAC) …
Administration (FDA). We integrate Clinical Proteomic Tumor Analysis Consortium (CPTAC) …
Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing
Human tumours typically harbour a remarkable number of somatic mutations. If presented
on major histocompatibility complex class I molecules (MHCI), peptides containing these …
on major histocompatibility complex class I molecules (MHCI), peptides containing these …
Deep learning using tumor HLA peptide mass spectrometry datasets improves neoantigen identification
Neoantigens, which are expressed on tumor cells, are one of the main targets of an effective
antitumor T-cell response. Cancer immunotherapies to target neoantigens are of growing …
antitumor T-cell response. Cancer immunotherapies to target neoantigens are of growing …
Properties of MHC class I presented peptides that enhance immunogenicity
JJA Calis, M Maybeno, JA Greenbaum… - PLoS computational …, 2013 - journals.plos.org
T-cells have to recognize peptides presented on MHC molecules to be activated and elicit
their effector functions. Several studies demonstrate that some peptides are more …
their effector functions. Several studies demonstrate that some peptides are more …
T cell epitope predictions
Throughout the body, T cells monitor MHC-bound ligands expressed on the surface of
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …
essentially all cell types. MHC ligands that trigger a T cell immune response are referred to …
Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival
Somatic missense mutations can initiate tumorogenesis and, conversely, anti-tumor
cytotoxic T cell (CTL) responses. Tumor genome analysis has revealed extreme …
cytotoxic T cell (CTL) responses. Tumor genome analysis has revealed extreme …
Peptides for vaccine development
IW Hamley - ACS applied bio materials, 2022 - ACS Publications
This review discusses peptide epitopes used as antigens in the development of vaccines in
clinical trials as well as future vaccine candidates. It covers peptides used in potential …
clinical trials as well as future vaccine candidates. It covers peptides used in potential …
Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia
M Rajasagi, SA Shukla, EF Fritsch… - Blood, The Journal …, 2014 - ashpublications.org
Genome sequencing has revealed a large number of shared and personal somatic
mutations across human cancers. In principle, any genetic alteration affecting a protein …
mutations across human cancers. In principle, any genetic alteration affecting a protein …