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Why nature really chose phosphate
Phosphoryl transfer plays key roles in signaling, energy transduction, protein synthesis, and
maintaining the integrity of the genetic material. On the surface, it would appear to be a …
maintaining the integrity of the genetic material. On the surface, it would appear to be a …
QM/MM methods for biological systems
HM Senn, W Thiel - Atomistic approaches in modern biology: from …, 2007 - Springer
Thirty years after the seminal contribution by Warshel and Levitt, we review the state of the
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …
art of combined quantum-mechanics/molecular-mechanics (QM/MM) methods, with a focus …
N-Ras forms dimers at POPC membranes
Ras is a central regulator of cellular signaling pathways. It is mutated in 20–30% of human
tumors. To perform its function, Ras has to be bound to a membrane by a posttranslationally …
tumors. To perform its function, Ras has to be bound to a membrane by a posttranslationally …
On possible pitfalls in ab initio quantum mechanics/molecular mechanics minimization approaches for studies of enzymatic reactions
Reliable studies of enzymatic reactions by combined quantum mechanics/molecular
mechanics (QM/MM) approaches, with an ab initio description of the quantum region …
mechanics (QM/MM) approaches, with an ab initio description of the quantum region …
Structural basis of effector regulation and signal termination in heterotrimeric Gα proteins
SR Sprang, Z Chen, X Du - Advances in protein chemistry, 2007 - Elsevier
This chapter addresses, from a molecular structural perspective gained from examination of
x‐ray crystallographic and biochemical data, the mechanisms by which GTP‐bound Gα …
x‐ray crystallographic and biochemical data, the mechanisms by which GTP‐bound Gα …
Target-related applications of first principles quantum chemical methods in drug design
A fundamental postulate in the classical drug design paradigm is that the effect of a drug in
the human body is a consequence of the molecular recognition between a ligand (the drug) …
the human body is a consequence of the molecular recognition between a ligand (the drug) …
[HTML][HTML] Modeling the mechanisms of biological GTP hydrolysis
Enzymes that hydrolyze GTP are currently in the spotlight, due to their molecular switch
mechanism that controls many cellular processes. One of the best-known classes of these …
mechanism that controls many cellular processes. One of the best-known classes of these …
Ras and GTPase-activating protein (GAP) drive GTP into a precatalytic state as revealed by combining FTIR and biomolecular simulations
Members of the Ras superfamily regulate many cellular processes. They are down-
regulated by a GTPase reaction in which GTP is cleaved into GDP and P i by nucleophilic …
regulated by a GTPase reaction in which GTP is cleaved into GDP and P i by nucleophilic …
Metal fluorides as analogues for studies on phosphoryl transfer enzymes
Y **, NG Richards, JP Waltho… - Angewandte Chemie …, 2017 - Wiley Online Library
The 1994 structure of a transition‐state analogue with AlF4− and GDP complexed to G1α, a
small G protein, heralded a new field of research into the structure and mechanism of …
small G protein, heralded a new field of research into the structure and mechanism of …
Hydrolysis of guanosine triphosphate (GTP) by the Ras· GAP protein complex: reaction mechanism and kinetic scheme
MG Khrenova, BL Grigorenko… - The Journal of …, 2015 - ACS Publications
Molecular mechanisms of the hydrolysis of guanosine triphosphate (GTP) to guanosine
diphosphate (GDP) and inorganic phosphate (Pi) by the Ras· GAP protein complex are fully …
diphosphate (GDP) and inorganic phosphate (Pi) by the Ras· GAP protein complex are fully …