Biodiscoveryagent: An ai agent for designing genetic perturbation experiments
Agents based on large language models have shown great potential in accelerating
scientific discovery by leveraging their rich background knowledge and reasoning …
scientific discovery by leveraging their rich background knowledge and reasoning …
[HTML][HTML] Large Language Models, scientific knowledge and factuality: A framework to streamline human expert evaluation
Objective: The paper introduces a framework for the evaluation of the encoding of factual
scientific knowledge, designed to streamline the manual evaluation process typically …
scientific knowledge, designed to streamline the manual evaluation process typically …
Pathway-based analyses of gene expression profiles at low doses of ionizing radiation
Radiation exposure poses a significant threat to human health. Emerging research indicates
that even low-dose radiation once believed to be safe, may have harmful effects. This …
that even low-dose radiation once believed to be safe, may have harmful effects. This …
[HTML][HTML] A Comprehensive Evaluation of Large Language Models in Mining Gene Interactions and Pathway Knowledge
Background: Understanding complex biological pathways, including gene-gene interactions
and gene regulatory networks, is critical for exploring disease mechanisms and drug …
and gene regulatory networks, is critical for exploring disease mechanisms and drug …
Density estimation via measure transport: Outlook for applications in the biological sciences
V López‐Marrero, PR Johnstone… - Statistical Analysis and …, 2024 - Wiley Online Library
One among several advantages of measure transport methods is that they allow or a unified
framework for processing and analysis of data distributed according to a wide class of …
framework for processing and analysis of data distributed according to a wide class of …
GeneRAG: Enhancing Large Language Models with Gene-Related Task by Retrieval-Augmented Generation
Abstract Large Language Models (LLMs) like GPT-4 have revolutionized natural language
processing and are used in gene analysis, but their gene knowledge is incomplete. Fine …
processing and are used in gene analysis, but their gene knowledge is incomplete. Fine …
Large Language Models for Pathway Curation: A Preliminary Investigation
N Karkera, N Karkera, M Kumar, S Ghosh… - bioRxiv, 2024 - biorxiv.org
The pathway curation task involves analyzing scientific literature to identify and represent
cellular processes as pathways. This process, often time-consuming and labor-intensive …
cellular processes as pathways. This process, often time-consuming and labor-intensive …