[HTML][HTML] Integrative multi-omics approaches in cancer research: from biological networks to clinical subtypes

YJ Heo, C Hwa, GH Lee, JM Park, JY An - Molecules and cells, 2021‏ - Elsevier
Multi-omics approaches are novel frameworks that integrate multiple omics datasets
generated from the same patients to better understand the molecular and clinical features of …

Circulating biomarkers for gliomas

M Westphal, K Lamszus - Nature Reviews Neurology, 2015‏ - nature.com
Currently, gliomas are diagnosed by neuroimaging, and refined diagnosis requires
resection or biopsy to obtain tumour tissue for histopathological classification and grading …

[HTML][HTML] Phosphoproteome integration reveals patient-specific networks in prostate cancer

JM Drake, EO Paull, NA Graham, JK Lee, BA Smith… - Cell, 2016‏ - cell.com
We used clinical tissue from lethal metastatic castration-resistant prostate cancer (CRPC)
patients obtained at rapid autopsy to evaluate diverse genomic, transcriptomic, and …

Critical role of Wnt/β-catenin signaling in driving epithelial ovarian cancer platinum resistance

AB Nagaraj, P Joseph, O Kovalenko, S Singh… - …, 2015‏ - pmc.ncbi.nlm.nih.gov
Resistance to platinum-based chemotherapy is the major barrier to treating epithelial
ovarian cancer. To improve patient outcomes, it is critical to identify the underlying …

Network-based interpretation of diverse high-throughput datasets through the omics integrator software package

N Tuncbag, SJC Gosline, A Kedaigle… - PLoS computational …, 2016‏ - journals.plos.org
High-throughput,'omic'methods provide sensitive measures of biological responses to
perturbations. However, inherent biases in high-throughput assays make it difficult to …

Revealing disease-associated pathways by network integration of untargeted metabolomics

L Pirhaji, P Milani, M Leidl, T Curran, J Avila-Pacheco… - Nature …, 2016‏ - nature.com
Uncovering the molecular context of dysregulated metabolites is crucial to understand
pathogenic pathways. However, their system-level analysis has been limited owing to …

Cancer systems biology: a peek into the future of patient care?

HMJ Werner, GB Mills, PT Ram - Nature reviews Clinical oncology, 2014‏ - nature.com
Traditionally, scientific research has focused on studying individual events, such as single
mutations, gene function, or the effect that mutating one protein has on a biological …

Molecular network analysis of endometriosis reveals a role for c-Jun–regulated macrophage activation

MT Beste, N Pfäffle-Doyle, EA Prentice… - Science translational …, 2014‏ - science.org
Clinical management of endometriosis is limited by the complex relationship between
symptom severity, heterogeneous surgical presentation, and variability in clinical outcomes …

Large-scale models of signal propagation in human cells derived from discovery phosphoproteomic data

CDA Terfve, EH Wilkes, P Casado, PR Cutillas… - Nature …, 2015‏ - nature.com
Mass spectrometry is widely used to probe the proteome and its modifications in an
untargeted manner, with unrivalled coverage. Applied to phosphoproteomics, it has …

Elucidating MicroRNA regulatory networks using transcriptional, post-transcriptional, and histone modification measurements

SJC Gosline, AM Gurtan, CK JnBaptiste, A Bosson… - Cell reports, 2016‏ - cell.com
MicroRNAs (miRNAs) regulate diverse biological processes by repressing mRNAs, but their
modest effects on direct targets, together with their participation in larger regulatory …