Exploring chemical reaction space with machine learning models: Representation and feature perspective
Chemical reactions serve as foundational building blocks for organic chemistry and drug
design. In the era of large AI models, data-driven approaches have emerged to innovate the …
design. In the era of large AI models, data-driven approaches have emerged to innovate the …
Pre-training with fractional denoising to enhance molecular property prediction
Deep learning methods have been considered promising for accelerating molecular
screening in drug discovery and material design. Due to the limited availability of labelled …
screening in drug discovery and material design. Due to the limited availability of labelled …
Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey
The precise prediction of molecular properties is essential for advancements in drug
development, particularly in virtual screening and compound optimization. The recent …
development, particularly in virtual screening and compound optimization. The recent …
A deep learning framework for predicting molecular property based on multi-type features fusion
M Ma, X Lei - Computers in Biology and Medicine, 2024 - Elsevier
Extracting expressive molecular features is essential for molecular property prediction.
Sequence-based representation is a common representation of molecules, which ignores …
Sequence-based representation is a common representation of molecules, which ignores …
Mmpolymer: A multimodal multitask pretraining framework for polymer property prediction
Polymers are high-molecular-weight compounds constructed by the covalent bonding of
numerous identical or similar monomers so that their 3D structures are complex yet exhibit …
numerous identical or similar monomers so that their 3D structures are complex yet exhibit …
Multi-modal representation learning for molecular property prediction: sequence, graph, geometry
Recent years have seen a rapid growth of machine learning in cheminformatics problems. In
order to tackle the problem of insufficient training data in reality, more and more researchers …
order to tackle the problem of insufficient training data in reality, more and more researchers …
Non-homophilic graph pre-training and prompt learning
Graphs are ubiquitous for modeling complex relationships between objects across various
fields. Graph neural networks (GNNs) have become a mainstream technique for graph …
fields. Graph neural networks (GNNs) have become a mainstream technique for graph …
Unimap: universal smiles-graph representation learning
Molecular representation learning is fundamental for many drug related applications. Most
existing molecular pre-training models are limited in using single molecular modality, either …
existing molecular pre-training models are limited in using single molecular modality, either …
MOAT: Graph prompting for 3D molecular graphs
Molecular property prediction stands as a cornerstone task in AI-driven drug design and
discovery, wherein the atoms within a molecule serve as nodes, collectively forming a graph …
discovery, wherein the atoms within a molecule serve as nodes, collectively forming a graph …
A survey on multi-view fusion for predicting links in biomedical bipartite networks: Methods and applications
Biomedical research increasingly relies on the analysis of complex interactions between
biological entities, such as genes, proteins, and drugs. Although advancements in …
biological entities, such as genes, proteins, and drugs. Although advancements in …