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Sorting signed permutations by intergenic reversals
Genome rearrangements are mutations affecting large portions of a genome, and a reversal
is one of the most studied genome rearrangements in the literature through the Sorting by …
is one of the most studied genome rearrangements in the literature through the Sorting by …
Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions
The rearrangement distance is a method to compare genomes of different species. Such
distance is the number of rearrangement events necessary to transform one genome into …
distance is the number of rearrangement events necessary to transform one genome into …
Reversal and indel distance with intergenic region information
Recent works on genome rearrangements have shown that incorporating intergenic region
information along with gene order in models provides better estimations for the …
information along with gene order in models provides better estimations for the …
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information
The most common way to calculate the rearrangement distance between two genomes is to
use the size of a minimum length sequence of rearrangements that transforms one of the two …
use the size of a minimum length sequence of rearrangements that transforms one of the two …
Reversal and transposition distance of genomes considering flexible intergenic regions
Biologists have proposed a vast list of problems heavily studied by mathematicians,
computer scientists, and statisticians. From a theoretical point of view, biology can inspire …
computer scientists, and statisticians. From a theoretical point of view, biology can inspire …
A new 1.375-approximation algorithm for sorting by transpositions
Background sorting by transpositions (SBT) is a classical problem in genome
rearrangements. In 2012, SBT was proven to be NP-hard and the best approximation …
rearrangements. In 2012, SBT was proven to be NP-hard and the best approximation …
Genome Rearrangement Analysis: Cut and Join Genome Rearrangements and Gene Cluster Preserving Approaches
THM Middendorf, M Bernt - Comparative Genomics - Springer
Genome rearrangements are mutations that change the gene content of a genome or the
arrangement of the genes on a genome. Several years of research on genome …
arrangement of the genes on a genome. Several years of research on genome …
Reversals Distance Considering Flexible Intergenic Regions Sizes
Most mathematical models for genome rearrangement problems have considered only gene
order. In this way, the rearrangement distance considering some set of events, such as …
order. In this way, the rearrangement distance considering some set of events, such as …
Varia\c {c}\~ oes do Problema de Dist\^ ancia de Rearranjos
AO Alexandrino - arxiv preprint arxiv:2404.17996, 2024 - arxiv.org
Considering a pair of genomes, the goal of rearrangement distance problems is to estimate
how distant these genomes are from each other based on genome rearrangements …
how distant these genomes are from each other based on genome rearrangements …
Um novo algoritmo 1.375-aproximativo baseado em grupos de permutações para o Problema da Ordenação por Transposições
LAG Silva - 2022 - realp.unb.br
O Problema da Ordenação por Transposições (SBT, sigla dos termos em língua inglesa
Sorting By Transpositions) é um problema clássico em rearranjos de genoma. Em 2012 …
Sorting By Transpositions) é um problema clássico em rearranjos de genoma. Em 2012 …