Diet tracing in ecology: Method comparison and selection

JM Nielsen, EL Clare, B Hayden… - Methods in Ecology …, 2018 - Wiley Online Library
Determining diet is a key prerequisite for understanding species interactions, food web
structure and ecological dynamics. In recent years, there has been considerable …

Uses and misuses of environmental DNA in biodiversity science and conservation

ME Cristescu, PDN Hebert - Annual Review of Ecology …, 2018 - annualreviews.org
The study of environmental DNA (eDNA) has the potential to revolutionize biodiversity
science and conservation action by enabling the census of species on a global scale in near …

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

BE Deagle, AC Thomas, JC McInnes… - Molecular …, 2019 - Wiley Online Library
Advances in DNA sequencing technology have revolutionized the field of molecular analysis
of trophic interactions, and it is now possible to recover counts of food DNA sequences from …

Nitrogen cycling processes and the role of multi-trophic microbiota in dam-induced river-reservoir systems

N Yang, C Zhang, L Wang, Y Li, W Zhang, L Niu… - Water Research, 2021 - Elsevier
The nitrogen (N) cycle is one of the most important nutrient cycles in river systems, and it
plays an important role in maintaining biogeochemical balance and global climate stability …

An assessment of minimum sequence copy thresholds for identifying and reducing the prevalence of artefacts in dietary metabarcoding data

LE Drake, JP Cuff, RE Young… - Methods in Ecology …, 2022 - Wiley Online Library
Metabarcoding provides a powerful tool for investigating biodiversity and trophic
interactions, but the high sensitivity of this methodology makes it vulnerable to errors …

The ecologist's field guide to sequence‐based identification of biodiversity

S Creer, K Deiner, S Frey, D Porazinska… - Methods in ecology …, 2016 - Wiley Online Library
The past 100 years of ecological research has seen substantial progress in understanding
the natural world and likely effects of change, whether natural or anthropogenic. Traditional …

Promises and pitfalls of using high‐throughput sequencing for diet analysis

A Alberdi, O Aizpurua, K Bohmann… - Molecular ecology …, 2019 - Wiley Online Library
The application of high‐throughput sequencing‐based approaches to DNA extracted from
environmental samples such as gut contents and faeces has become a popular tool for …

[HTML][HTML] Forests and their canopies: achievements and horizons in canopy science

A Nakamura, RL Kitching, M Cao, TJ Creedy… - Trends in ecology & …, 2017 - cell.com
Forest canopies are dynamic interfaces between organisms and atmosphere, providing
buffered microclimates and complex microhabitats. Canopies form vertically stratified …

A review on the applications and recent advances in environmental DNA (eDNA) metagenomics

D Garlapati, B Charankumar, K Ramu… - … Science and Bio …, 2019 - Springer
Progressions accomplished in the field of molecular biology amid the most recent decade
has changed the way in which we contemplate biodiversity on earth. Together with the …

Genetic and genomic monitoring with minimally invasive sampling methods

EL Carroll, MW Bruford, JA DeWoody… - Evolutionary …, 2018 - Wiley Online Library
The decreasing cost and increasing scope and power of emerging genomic technologies
are resha** the field of molecular ecology. However, many modern genomic approaches …