Plant NLR diversity: the known unknowns of pan-NLRomes

AC Barragan, D Weigel - The Plant Cell, 2021 - academic.oup.com
Plants and pathogens constantly adapt to each other. As a consequence, many members of
the plant immune system, and especially the intracellular nucleotide-binding site leucine …

NLR receptors in plant immunity: making sense of the alphabet soup

MP Contreras, D Lüdke, H Pai, AA Toghani… - EMBO …, 2023 - embopress.org
Plants coordinately use cell‐surface and intracellular immune receptors to perceive
pathogens and mount an immune response. Intracellular events of pathogen recognition are …

Genome evolution and diversity of wild and cultivated potatoes

D Tang, Y Jia, J Zhang, H Li, L Cheng, P Wang, Z Bao… - Nature, 2022 - nature.com
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …

Multiple wheat genomes reveal global variation in modern breeding

S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa… - Nature, 2020 - nature.com
Advances in genomics have expedited the improvement of several agriculturally important
crops but similar efforts in wheat (Triticum spp.) have been more challenging. This is largely …

Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors

X Lin, Y Jia, R Heal, M Prokchorchik… - Nature Genetics, 2023 - nature.com
Potato (Solanum tuberosum) and tomato (Solanum lycopersicon) crops suffer severe losses
to late blight caused by the oomycete pathogen Phytophthora infestans. Solanum …

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …

G Hoopes, X Meng, JP Hamilton, SR Achakkagari… - Molecular plant, 2022 - cell.com
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …

Telomere-to-telomere and gap-free reference genome assembly of the kiwifruit Actinidia chinensis

J Yue, Q Chen, Y Wang, L Zhang, C Ye… - Horticulture …, 2023 - academic.oup.com
Kiwifruit is an economically and nutritionally important fruit crop with extremely high contents
of vitamin C. However, the previously released versions of kiwifruit genomes all have a mass …

Dissection of a rapidly evolving wheat resistance gene cluster by long-read genome sequencing accelerated the cloning of Pm69

Y Li, ZZ Wei, H Sela, L Govta, V Klymiuk… - Plant …, 2024 - cell.com
Gene cloning in repeat-rich polyploid genomes remains challenging. Here, we describe a
strategy for overcoming major bottlenecks in cloning of the powdery mildew resistance gene …

A collinearity-incorporating homology inference strategy for connecting emerging assemblies in the triticeae tribe as a pilot practice in the plant pangenomic era

Y Chen, W Song, X **e, Z Wang, P Guan, H Peng… - Molecular Plant, 2020 - cell.com
Plant genome sequencing has dramatically increased, and some species even have
multiple high-quality reference versions. Demands for clade-specific homology inference …

Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing

C Belser, FC Baurens, B Noel, G Martin… - Communications …, 2021 - nature.com
Long-read technologies hold the promise to obtain more complete genome assemblies and
to make them easier. Coupled with long-range technologies, they can reveal the architecture …