[HTML][HTML] Nanopore sequencing and its application to the study of microbial communities
L Ciuffreda, H Rodríguez-Pérez, C Flores - Computational and structural …, 2021 - Elsevier
Since its introduction, nanopore sequencing has enhanced our ability to study complex
microbial samples through the possibility to sequence long reads in real time using …
microbial samples through the possibility to sequence long reads in real time using …
[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
American gut: an open platform for citizen science microbiome research
Although much work has linked the human microbiome to specific phenotypes and lifestyle
variables, data from different projects have been challenging to integrate and the extent of …
variables, data from different projects have been challenging to integrate and the extent of …
Alzheimer's disease microbiome is associated with dysregulation of the anti-inflammatory P-glycoprotein pathway
The microbiota-gut-brain axis is a bidirectional communication system that is poorly
understood. Alzheimer's disease (AD), the most common cause of dementia, has long been …
understood. Alzheimer's disease (AD), the most common cause of dementia, has long been …
Exploring bacterial diversity via a curated and searchable snapshot of archived DNA sequences
The open sharing of genomic data provides an incredibly rich resource for the study of
bacterial evolution and function and even anthropogenic activities such as the widespread …
bacterial evolution and function and even anthropogenic activities such as the widespread …
Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype
While the association between colorectal cancer (CRC) features and Fusobacterium has
been extensively studied, less is known of other intratumoral bacteria. Here, we leverage …
been extensively studied, less is known of other intratumoral bacteria. Here, we leverage …
Species-resolved sequencing of low-biomass or degraded microbiomes using 2bRAD-M
Microbiome samples with low microbial biomass or severe DNA degradation remain
challenging for amplicon-based or whole-metagenome sequencing approaches. Here, we …
challenging for amplicon-based or whole-metagenome sequencing approaches. Here, we …
Discovery of disease-adapted bacterial lineages in inflammatory bowel diseases
Gut bacteria are implicated in inflammatory bowel disease (IBD), but the strains driving these
associations are unknown. Large-scale studies of microbiome evolution could reveal the …
associations are unknown. Large-scale studies of microbiome evolution could reveal the …
[HTML][HTML] Unprecedented Harmful algal bloom in the UK and Ireland's largest lake associated with gastrointestinal bacteria, microcystins and anabaenopeptins …
Abstract Harmful Algal Blooms (HABs) are outbreaks of aquatic toxic microalgae emerging
as a global problem driven by nutrient enrichment, global climate change and invasive …
as a global problem driven by nutrient enrichment, global climate change and invasive …
Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy
We introduce the operational genomic unit (OGU) method, a metagenome analysis strategy
that directly exploits sequence alignment hits to individual reference genomes as the …
that directly exploits sequence alignment hits to individual reference genomes as the …