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Pre-trained language models in biomedical domain: A systematic survey
Pre-trained language models (PLMs) have been the de facto paradigm for most natural
language processing tasks. This also benefits the biomedical domain: researchers from …
language processing tasks. This also benefits the biomedical domain: researchers from …
Few-shot learning for medical text: A review of advances, trends, and opportunities
Background: Few-shot learning (FSL) is a class of machine learning methods that require
small numbers of labeled instances for training. With many medical topics having limited …
small numbers of labeled instances for training. With many medical topics having limited …
Does synthetic data generation of llms help clinical text mining?
Recent advancements in large language models (LLMs) have led to the development of
highly potent models like OpenAI's ChatGPT. These models have exhibited exceptional …
highly potent models like OpenAI's ChatGPT. These models have exhibited exceptional …
A survey of event extraction from text
Numerous important events happen everyday and everywhere but are reported in different
media sources with different narrative styles. How to detect whether real-world events have …
media sources with different narrative styles. How to detect whether real-world events have …
MAVEN: A massive general domain event detection dataset
Event detection (ED), which means identifying event trigger words and classifying event
types, is the first and most fundamental step for extracting event knowledge from plain text …
types, is the first and most fundamental step for extracting event knowledge from plain text …
Crossner: Evaluating cross-domain named entity recognition
Cross-domain named entity recognition (NER) models are able to cope with the scarcity
issue of NER samples in target domains. However, most of the existing NER benchmarks …
issue of NER samples in target domains. However, most of the existing NER benchmarks …
COVID-19 literature knowledge graph construction and drug repurposing report generation
To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant
biomedical knowledge in scientific literature to understand the disease mechanism and …
biomedical knowledge in scientific literature to understand the disease mechanism and …
Distant supervision for relation extraction beyond the sentence boundary
The growing demand for structured knowledge has led to great interest in relation extraction,
especially in cases with limited supervision. However, existing distance supervision …
especially in cases with limited supervision. However, existing distance supervision …
[HTML][HTML] Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1
Abstract The 2014 i2b2/UTHealth Natural Language Processing (NLP) shared task featured
four tracks. The first of these was the de-identification track focused on identifying protected …
four tracks. The first of these was the de-identification track focused on identifying protected …
Community challenges in biomedical text mining over 10 years: success, failure and the future
CC Huang, Z Lu - Briefings in bioinformatics, 2016 - academic.oup.com
One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …