Microtubule-organizing centers: from the centrosome to non-centrosomal sites

AD Sanchez, JL Feldman - Current opinion in cell biology, 2017 - Elsevier
The process of cellular differentiation requires the distinct spatial organization of the
microtubule cytoskeleton, the arrangement of which is specific to cell type. Microtubule …

Using networks to measure similarity between genes: association index selection

JIF Bass, A Diallo, J Nelson, JM Soto, CL Myers… - Nature …, 2013 - nature.com
Biological networks can be used to functionally annotate genes on the basis of interaction-
profile similarities. Metrics known as association indices can be used to quantify interaction …

Inductive matrix completion for predicting gene–disease associations

N Natarajan, IS Dhillon - Bioinformatics, 2014 - academic.oup.com
Motivation: Most existing methods for predicting causal disease genes rely on specific type
of evidence, and are therefore limited in terms of applicability. More often than not, the type …

Whole-body gene expression atlas of an adult metazoan

A Ghaddar, E Armingol, C Huynh, L Gevirtzman… - Science …, 2023 - science.org
Gene activity defines cell identity, drives intercellular communication, and underlies the
functioning of multicellular organisms. We present the single-cell resolution atlas of gene …

An image analysis toolbox for high-throughput C. elegans assays

C Wählby, L Kamentsky, ZH Liu, T Riklin-Raviv… - Nature …, 2012 - nature.com
We present a toolbox for high-throughput screening of image-based Caenorhabditis
elegans phenotypes. The image analysis algorithms measure morphological phenotypes in …

PIKfyve regulates vacuole maturation and nutrient recovery following engulfment

S Krishna, W Palm, Y Lee, W Yang… - Developmental cell, 2016 - cell.com
The scavenging of extracellular macromolecules by engulfment can sustain cell growth in a
nutrient-depleted environment. Engulfed macromolecules are contained within vacuoles that …

Prediction and validation of gene-disease associations using methods inspired by social network analyses

UM Singh-Blom, N Natarajan, A Tewari, JO Woods… - PloS one, 2013 - journals.plos.org
Correctly identifying associations of genes with diseases has long been a goal in biology.
With the emergence of large-scale gene-phenotype association datasets in biology, we can …

Neuropeptide GPCRs in C. elegans

L Frooninckx, L Van Rompay, L Temmerman… - Frontiers in …, 2012 - frontiersin.org
Like most organisms, the nematode Caenorhabditis elegans relies heavily on
neuropeptidergic signaling. This tiny animal represents a suitable model system to study …

Mitotic Cell Division in Caenorhabditis elegans

L Pintard, B Bowerman - Genetics, 2019 - academic.oup.com
Mitotic cell divisions increase cell number while faithfully distributing the replicated genome
at each division. The Caenorhabditis elegans embryo is a powerful model for eukaryotic cell …

Hierarchical assembly of the eggshell and permeability barrier in C. elegans

SK Olson, G Greenan, A Desai, T Müller-Reichert… - Journal of Cell …, 2012 - rupress.org
In metazoans, fertilization triggers the assembly of an extracellular coat that constitutes the
interface between the embryo and its environment. In nematodes, this coat is the eggshell …